Hb_067345_010

Information

Type -
Description -
Location Contig67345: 4428-5975
Sequence    

Annotation

kegg
ID rcu:RCOM_0401550
description ubiquitin-protein ligase, putative
nr
ID XP_012078087.1
description PREDICTED: F-box protein CPR30-like [Jatropha curcas]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID A0A067K9X2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13698 PE=4 SV=1
Gene Ontology
ID GO:0016874
description f-box protein cpr30

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53501: 4522-16734
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067345_010 0.0 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
2 Hb_001617_060 0.073462766 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
3 Hb_025012_010 0.0790022304 - - PREDICTED: importin-4 [Vitis vinifera]
4 Hb_005679_050 0.0820180281 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_029142_010 0.0823476501 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
6 Hb_000347_130 0.0825309094 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
7 Hb_000613_080 0.0846034154 - - PREDICTED: mucin-5AC-like [Nicotiana sylvestris]
8 Hb_000283_070 0.0859716725 - - PREDICTED: T-complex protein 1 subunit delta [Jatropha curcas]
9 Hb_000318_510 0.0902610932 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15980 [Jatropha curcas]
10 Hb_000436_040 0.0902825601 - - PREDICTED: transportin-1 [Jatropha curcas]
11 Hb_001322_210 0.0904049219 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
12 Hb_000567_010 0.0912448365 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
13 Hb_011716_020 0.091806966 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
14 Hb_002027_270 0.092182121 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
15 Hb_000768_110 0.0922278588 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
16 Hb_001700_040 0.0923284138 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
17 Hb_002196_020 0.0926007188 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_004102_140 0.0928895223 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005494_020 0.0929364351 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
20 Hb_003966_030 0.0933193824 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X7 [Jatropha curcas]

Gene co-expression network

sample Hb_067345_010 Hb_067345_010 Hb_001617_060 Hb_001617_060 Hb_067345_010--Hb_001617_060 Hb_025012_010 Hb_025012_010 Hb_067345_010--Hb_025012_010 Hb_005679_050 Hb_005679_050 Hb_067345_010--Hb_005679_050 Hb_029142_010 Hb_029142_010 Hb_067345_010--Hb_029142_010 Hb_000347_130 Hb_000347_130 Hb_067345_010--Hb_000347_130 Hb_000613_080 Hb_000613_080 Hb_067345_010--Hb_000613_080 Hb_001617_060--Hb_000613_080 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_004102_140 Hb_004102_140 Hb_001617_060--Hb_004102_140 Hb_004935_030 Hb_004935_030 Hb_001617_060--Hb_004935_030 Hb_002027_270 Hb_002027_270 Hb_025012_010--Hb_002027_270 Hb_004619_050 Hb_004619_050 Hb_025012_010--Hb_004619_050 Hb_025012_010--Hb_000347_130 Hb_007904_220 Hb_007904_220 Hb_025012_010--Hb_007904_220 Hb_003428_070 Hb_003428_070 Hb_025012_010--Hb_003428_070 Hb_001040_160 Hb_001040_160 Hb_025012_010--Hb_001040_160 Hb_002493_020 Hb_002493_020 Hb_005679_050--Hb_002493_020 Hb_001700_040 Hb_001700_040 Hb_005679_050--Hb_001700_040 Hb_005679_050--Hb_001617_060 Hb_005679_050--Hb_003966_030 Hb_001691_120 Hb_001691_120 Hb_005679_050--Hb_001691_120 Hb_005494_020 Hb_005494_020 Hb_029142_010--Hb_005494_020 Hb_005122_080 Hb_005122_080 Hb_029142_010--Hb_005122_080 Hb_000567_010 Hb_000567_010 Hb_029142_010--Hb_000567_010 Hb_000107_040 Hb_000107_040 Hb_029142_010--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_029142_010--Hb_000023_060 Hb_000997_030 Hb_000997_030 Hb_029142_010--Hb_000997_030 Hb_000600_070 Hb_000600_070 Hb_000347_130--Hb_000600_070 Hb_000347_130--Hb_003966_030 Hb_000347_130--Hb_000567_010 Hb_000347_130--Hb_005494_020 Hb_000347_130--Hb_003428_070 Hb_000613_080--Hb_003966_030 Hb_174821_010 Hb_174821_010 Hb_000613_080--Hb_174821_010 Hb_003449_070 Hb_003449_070 Hb_000613_080--Hb_003449_070 Hb_003044_020 Hb_003044_020 Hb_000613_080--Hb_003044_020 Hb_000922_370 Hb_000922_370 Hb_000613_080--Hb_000922_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.9502 29.4045 15.6502 23.0369 41.2798 75.6985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.348 19.2584 31.8503 47.7144 17.147

CAGE analysis