Hb_067402_010

Information

Type -
Description -
Location Contig67402: 63-529
Sequence    

Annotation

kegg
ID cit:102621964
description beta-adaptin-like protein B-like
nr
ID KDO76285.1
description hypothetical protein CISIN_1g0029712mg, partial [Citrus sinensis]
swissprot
ID O81742
description Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2
trembl
ID A0A067GCC2
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0029712mg PE=4 SV=1
Gene Ontology
ID GO:0030131
description beta-adaptin-like protein c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067402_010 0.0 - - hypothetical protein CISIN_1g0029712mg, partial [Citrus sinensis]
2 Hb_008096_010 0.1268857048 - - hypothetical protein MTR_1g045660 [Medicago truncatula]
3 Hb_001189_090 0.1395549123 - - carbon catabolite repressor protein, putative [Ricinus communis]
4 Hb_018133_040 0.1399977774 - - PREDICTED: probable apyrase 7 [Jatropha curcas]
5 Hb_114310_090 0.1497997753 - - PREDICTED: low-temperature-induced cysteine proteinase [Jatropha curcas]
6 Hb_001632_040 0.150395221 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
7 Hb_012627_030 0.1529932462 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
8 Hb_000363_460 0.1556271579 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_001322_170 0.1569938832 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
10 Hb_003206_090 0.1570045144 - - PREDICTED: protein trichome birefringence-like 5 [Jatropha curcas]
11 Hb_002276_170 0.1571172762 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
12 Hb_000313_260 0.1585312519 - - auxin:hydrogen symporter, putative [Ricinus communis]
13 Hb_001512_040 0.1597610194 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
14 Hb_068804_100 0.1598090458 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
15 Hb_002301_300 0.1602651681 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
16 Hb_011618_080 0.1610012688 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
17 Hb_034432_030 0.1618347073 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
18 Hb_000676_070 0.1622100814 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
19 Hb_027380_060 0.1638158776 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
20 Hb_000522_170 0.1643930488 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_067402_010 Hb_067402_010 Hb_008096_010 Hb_008096_010 Hb_067402_010--Hb_008096_010 Hb_001189_090 Hb_001189_090 Hb_067402_010--Hb_001189_090 Hb_018133_040 Hb_018133_040 Hb_067402_010--Hb_018133_040 Hb_114310_090 Hb_114310_090 Hb_067402_010--Hb_114310_090 Hb_001632_040 Hb_001632_040 Hb_067402_010--Hb_001632_040 Hb_012627_030 Hb_012627_030 Hb_067402_010--Hb_012627_030 Hb_007811_030 Hb_007811_030 Hb_008096_010--Hb_007811_030 Hb_002276_170 Hb_002276_170 Hb_008096_010--Hb_002276_170 Hb_008096_010--Hb_018133_040 Hb_000236_240 Hb_000236_240 Hb_008096_010--Hb_000236_240 Hb_008096_010--Hb_001632_040 Hb_001019_190 Hb_001019_190 Hb_008096_010--Hb_001019_190 Hb_000006_010 Hb_000006_010 Hb_001189_090--Hb_000006_010 Hb_001009_320 Hb_001009_320 Hb_001189_090--Hb_001009_320 Hb_000152_360 Hb_000152_360 Hb_001189_090--Hb_000152_360 Hb_000139_260 Hb_000139_260 Hb_001189_090--Hb_000139_260 Hb_000161_040 Hb_000161_040 Hb_001189_090--Hb_000161_040 Hb_000522_170 Hb_000522_170 Hb_001189_090--Hb_000522_170 Hb_001243_040 Hb_001243_040 Hb_018133_040--Hb_001243_040 Hb_018133_040--Hb_002276_170 Hb_018133_040--Hb_114310_090 Hb_001322_170 Hb_001322_170 Hb_018133_040--Hb_001322_170 Hb_018133_040--Hb_001632_040 Hb_114310_090--Hb_001243_040 Hb_007416_330 Hb_007416_330 Hb_114310_090--Hb_007416_330 Hb_032202_140 Hb_032202_140 Hb_114310_090--Hb_032202_140 Hb_002013_020 Hb_002013_020 Hb_114310_090--Hb_002013_020 Hb_114310_090--Hb_001632_040 Hb_123915_040 Hb_123915_040 Hb_114310_090--Hb_123915_040 Hb_004414_060 Hb_004414_060 Hb_001632_040--Hb_004414_060 Hb_001632_040--Hb_002276_170 Hb_001632_040--Hb_001243_040 Hb_004907_080 Hb_004907_080 Hb_001632_040--Hb_004907_080 Hb_000342_130 Hb_000342_130 Hb_001632_040--Hb_000342_130 Hb_012627_030--Hb_007811_030 Hb_000300_160 Hb_000300_160 Hb_012627_030--Hb_000300_160 Hb_004369_020 Hb_004369_020 Hb_012627_030--Hb_004369_020 Hb_000046_320 Hb_000046_320 Hb_012627_030--Hb_000046_320 Hb_111985_050 Hb_111985_050 Hb_012627_030--Hb_111985_050 Hb_068804_100 Hb_068804_100 Hb_012627_030--Hb_068804_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.61807 0.877656 2.19626 2.64088 5.07742 0.961639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01926 2.1392 2.71533 1.97131 2.9545

CAGE analysis