Hb_067664_010

Information

Type -
Description -
Location Contig67664: 51-830
Sequence    

Annotation

kegg
ID tcc:TCM_034588
description Nbs-lrr resistance protein, putative
nr
ID XP_012068101.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q7XA40
description Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2
trembl
ID A0A067KZA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15943 PE=4 SV=1
Gene Ontology
ID GO:0043531
description nbs-lrr resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53604: 1-145 , PASA_asmbl_53605: 460-874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067664_010 0.0 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_000032_600 0.0804184791 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_001054_060 0.0902518122 - - PREDICTED: dihydropyrimidine dehydrogenase [NADP(+)] [Jatropha curcas]
4 Hb_000977_150 0.1036411341 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
5 Hb_001754_120 0.1169163426 - - PREDICTED: probable protein phosphatase 2C 40 [Jatropha curcas]
6 Hb_000997_290 0.1217502249 - - PREDICTED: acylamino-acid-releasing enzyme [Jatropha curcas]
7 Hb_001124_140 0.1223558732 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
8 Hb_033152_110 0.1250710686 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN3 [Jatropha curcas]
9 Hb_008494_090 0.1296114116 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
10 Hb_001969_130 0.1318642888 - - PREDICTED: molybdate transporter 2 [Jatropha curcas]
11 Hb_000203_210 0.1354437696 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
12 Hb_000997_320 0.1375616445 - - PREDICTED: acylamino-acid-releasing enzyme-like [Malus domestica]
13 Hb_187959_010 0.1392334706 - - hypothetical protein JCGZ_12266 [Jatropha curcas]
14 Hb_005731_100 0.1396259369 - - monovalent cation:proton antiporter, putative [Ricinus communis]
15 Hb_001195_370 0.1429345295 - - -
16 Hb_000622_060 0.1432367036 - - PREDICTED: uncharacterized protein At5g05190-like isoform X1 [Jatropha curcas]
17 Hb_000130_200 0.1461694793 - - PREDICTED: putative serine/threonine-protein kinase isoform X3 [Jatropha curcas]
18 Hb_030312_030 0.1470610298 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40 isoform X1 [Jatropha curcas]
19 Hb_006185_030 0.1476311323 - - threonine synthase, putative [Ricinus communis]
20 Hb_178968_080 0.1476915309 - - PREDICTED: serine/threonine-protein kinase OSR1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_067664_010 Hb_067664_010 Hb_000032_600 Hb_000032_600 Hb_067664_010--Hb_000032_600 Hb_001054_060 Hb_001054_060 Hb_067664_010--Hb_001054_060 Hb_000977_150 Hb_000977_150 Hb_067664_010--Hb_000977_150 Hb_001754_120 Hb_001754_120 Hb_067664_010--Hb_001754_120 Hb_000997_290 Hb_000997_290 Hb_067664_010--Hb_000997_290 Hb_001124_140 Hb_001124_140 Hb_067664_010--Hb_001124_140 Hb_000032_600--Hb_001054_060 Hb_000032_600--Hb_000977_150 Hb_178968_080 Hb_178968_080 Hb_000032_600--Hb_178968_080 Hb_000130_200 Hb_000130_200 Hb_000032_600--Hb_000130_200 Hb_000032_600--Hb_001754_120 Hb_187959_010 Hb_187959_010 Hb_001054_060--Hb_187959_010 Hb_001054_060--Hb_000977_150 Hb_030312_030 Hb_030312_030 Hb_001054_060--Hb_030312_030 Hb_000997_320 Hb_000997_320 Hb_001054_060--Hb_000997_320 Hb_002811_190 Hb_002811_190 Hb_000977_150--Hb_002811_190 Hb_000329_080 Hb_000329_080 Hb_000977_150--Hb_000329_080 Hb_001195_370 Hb_001195_370 Hb_000977_150--Hb_001195_370 Hb_033152_110 Hb_033152_110 Hb_001754_120--Hb_033152_110 Hb_000979_260 Hb_000979_260 Hb_001754_120--Hb_000979_260 Hb_005731_100 Hb_005731_100 Hb_001754_120--Hb_005731_100 Hb_000622_060 Hb_000622_060 Hb_001754_120--Hb_000622_060 Hb_001754_120--Hb_001124_140 Hb_000997_290--Hb_001195_370 Hb_009193_010 Hb_009193_010 Hb_000997_290--Hb_009193_010 Hb_000997_290--Hb_000329_080 Hb_000066_040 Hb_000066_040 Hb_000997_290--Hb_000066_040 Hb_001425_010 Hb_001425_010 Hb_000997_290--Hb_001425_010 Hb_011174_080 Hb_011174_080 Hb_000997_290--Hb_011174_080 Hb_001124_140--Hb_005731_100 Hb_001969_130 Hb_001969_130 Hb_001124_140--Hb_001969_130 Hb_022425_050 Hb_022425_050 Hb_001124_140--Hb_022425_050 Hb_002026_030 Hb_002026_030 Hb_001124_140--Hb_002026_030 Hb_001865_010 Hb_001865_010 Hb_001124_140--Hb_001865_010 Hb_004129_010 Hb_004129_010 Hb_001124_140--Hb_004129_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.296269 1.58529 1.71162 2.30915 0.0304514 0.0804709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.628216 0.329299 0.297127 2.11228 4.39548

CAGE analysis