Hb_067776_020

Information

Type -
Description -
Location Contig67776: 631-1084
Sequence    

Annotation

kegg
ID rcu:RCOM_0292970
description signal recognition particle protein, putative
nr
ID XP_012072979.1
description PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
swissprot
ID P37107
description Signal recognition particle 54 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=FFC PE=1 SV=1
trembl
ID A0A067KZP6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06763 PE=3 SV=1
Gene Ontology
ID GO:0048500
description signal recognition particle 54 kda chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53626: 630-1015
cDNA
(Sanger)
(ID:Location)		 015_G09.ab1: 630-1015

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067776_020 0.0 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
2 Hb_003388_030 0.1070201534 - - PREDICTED: uncharacterized protein LOC105649746 isoform X1 [Jatropha curcas]
3 Hb_000084_280 0.1309196919 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
4 Hb_005470_020 0.1393516186 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic-like [Jatropha curcas]
5 Hb_000170_190 0.1412010205 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
6 Hb_004987_070 0.1478837004 - - PREDICTED: heat shock 70 kDa protein 17-like isoform X1 [Jatropha curcas]
7 Hb_001009_100 0.1488109861 - - -
8 Hb_048141_020 0.1538631458 - - tetratricopeptide repeat-like superfamily protein, partial [Manihot esculenta]
9 Hb_002601_130 0.1561792592 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
10 Hb_005527_030 0.1576548908 - - PREDICTED: pentatricopeptide repeat-containing protein At3g42630 isoform X1 [Jatropha curcas]
11 Hb_001898_090 0.1608902861 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic [Jatropha curcas]
12 Hb_000384_080 0.1631971477 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Jatropha curcas]
13 Hb_000057_050 0.1678792148 - - hypothetical protein Csa_7G132920 [Cucumis sativus]
14 Hb_023278_010 0.1697574618 - - Chaperone protein DnaJ [Glycine soja]
15 Hb_001019_120 0.1724908032 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
16 Hb_000300_120 0.1742061031 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
17 Hb_008489_020 0.1755408462 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
18 Hb_001718_050 0.1775617904 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
19 Hb_000441_180 0.177695078 - - Early endosome antigen, putative [Ricinus communis]
20 Hb_000487_220 0.1786372841 - - eukaryotic translation elongation factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_067776_020 Hb_067776_020 Hb_003388_030 Hb_003388_030 Hb_067776_020--Hb_003388_030 Hb_000084_280 Hb_000084_280 Hb_067776_020--Hb_000084_280 Hb_005470_020 Hb_005470_020 Hb_067776_020--Hb_005470_020 Hb_000170_190 Hb_000170_190 Hb_067776_020--Hb_000170_190 Hb_004987_070 Hb_004987_070 Hb_067776_020--Hb_004987_070 Hb_001009_100 Hb_001009_100 Hb_067776_020--Hb_001009_100 Hb_003388_030--Hb_001009_100 Hb_000384_080 Hb_000384_080 Hb_003388_030--Hb_000384_080 Hb_003388_030--Hb_004987_070 Hb_000300_120 Hb_000300_120 Hb_003388_030--Hb_000300_120 Hb_003388_030--Hb_005470_020 Hb_000084_280--Hb_005470_020 Hb_000948_170 Hb_000948_170 Hb_000084_280--Hb_000948_170 Hb_008206_060 Hb_008206_060 Hb_000084_280--Hb_008206_060 Hb_000015_100 Hb_000015_100 Hb_000084_280--Hb_000015_100 Hb_048141_020 Hb_048141_020 Hb_000084_280--Hb_048141_020 Hb_000816_100 Hb_000816_100 Hb_000084_280--Hb_000816_100 Hb_005470_020--Hb_048141_020 Hb_005470_020--Hb_000816_100 Hb_005470_020--Hb_000015_100 Hb_005470_020--Hb_000948_170 Hb_005470_020--Hb_000300_120 Hb_002601_130 Hb_002601_130 Hb_000170_190--Hb_002601_130 Hb_002276_060 Hb_002276_060 Hb_000170_190--Hb_002276_060 Hb_000300_580 Hb_000300_580 Hb_000170_190--Hb_000300_580 Hb_000010_180 Hb_000010_180 Hb_000170_190--Hb_000010_180 Hb_008489_020 Hb_008489_020 Hb_000170_190--Hb_008489_020 Hb_000768_190 Hb_000768_190 Hb_000170_190--Hb_000768_190 Hb_003058_020 Hb_003058_020 Hb_004987_070--Hb_003058_020 Hb_004987_070--Hb_000015_100 Hb_004987_070--Hb_000384_080 Hb_004987_070--Hb_005470_020 Hb_000780_190 Hb_000780_190 Hb_004987_070--Hb_000780_190 Hb_004884_020 Hb_004884_020 Hb_001009_100--Hb_004884_020 Hb_001009_100--Hb_004987_070 Hb_001009_100--Hb_000300_120 Hb_000069_320 Hb_000069_320 Hb_001009_100--Hb_000069_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.5503 25.5256 30.7929 23.8642 75.6102 130.004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.7453 5.61025 11.9435 27.2093 94.456

CAGE analysis