Hb_068014_010

Information

Type -
Description -
Location Contig68014: 19-237
Sequence    

Annotation

kegg
ID pop:POPTR_0312s00200g
description hypothetical protein
nr
ID XP_006388146.1
description hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
swissprot
ID Q9SN35
description Ras-related protein RABA1d OS=Arabidopsis thaliana GN=RABA1D PE=2 SV=1
trembl
ID U7DVP0
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0312s00200g PE=4 SV=1
Gene Ontology
ID GO:0005622
description ras-related protein raba1c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068014_010 0.0 - - hypothetical protein POPTR_0312s00200g, partial [Populus trichocarpa]
2 Hb_169170_010 0.1186923767 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
3 Hb_005679_070 0.1225563838 - - hypothetical protein M569_07741, partial [Genlisea aurea]
4 Hb_006663_090 0.1239428512 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
5 Hb_007083_020 0.1254229843 - - hypothetical protein F775_15403 [Aegilops tauschii]
6 Hb_019053_010 0.1287800097 - - -
7 Hb_106415_010 0.1343688269 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
8 Hb_116632_010 0.1388688306 - - unnamed protein product [Vitis vinifera]
9 Hb_177103_010 0.1443773617 - - PREDICTED: histone H2AX [Elaeis guineensis]
10 Hb_003371_170 0.1454540581 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002815_050 0.1468060127 - - PREDICTED: succinate-semialdehyde dehydrogenase, mitochondrial [Populus euphratica]
12 Hb_033385_010 0.1476422859 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
13 Hb_005085_030 0.1514964788 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
14 Hb_009119_020 0.1577950954 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
15 Hb_001623_290 0.158584265 - - unknown [Populus trichocarpa]
16 Hb_000825_030 0.1595977077 - - zinc binding dehydrogenase, putative [Ricinus communis]
17 Hb_115477_010 0.1618670065 - - Protein dom-3, putative [Ricinus communis]
18 Hb_007188_020 0.1636331173 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
19 Hb_001623_300 0.1683897505 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
20 Hb_007188_030 0.1707939299 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]

Gene co-expression network

sample Hb_068014_010 Hb_068014_010 Hb_169170_010 Hb_169170_010 Hb_068014_010--Hb_169170_010 Hb_005679_070 Hb_005679_070 Hb_068014_010--Hb_005679_070 Hb_006663_090 Hb_006663_090 Hb_068014_010--Hb_006663_090 Hb_007083_020 Hb_007083_020 Hb_068014_010--Hb_007083_020 Hb_019053_010 Hb_019053_010 Hb_068014_010--Hb_019053_010 Hb_106415_010 Hb_106415_010 Hb_068014_010--Hb_106415_010 Hb_177103_010 Hb_177103_010 Hb_169170_010--Hb_177103_010 Hb_006198_090 Hb_006198_090 Hb_169170_010--Hb_006198_090 Hb_005318_020 Hb_005318_020 Hb_169170_010--Hb_005318_020 Hb_007447_020 Hb_007447_020 Hb_169170_010--Hb_007447_020 Hb_007188_030 Hb_007188_030 Hb_169170_010--Hb_007188_030 Hb_002815_050 Hb_002815_050 Hb_005679_070--Hb_002815_050 Hb_000329_560 Hb_000329_560 Hb_005679_070--Hb_000329_560 Hb_001998_140 Hb_001998_140 Hb_005679_070--Hb_001998_140 Hb_005085_030 Hb_005085_030 Hb_005679_070--Hb_005085_030 Hb_005679_070--Hb_006663_090 Hb_000825_030 Hb_000825_030 Hb_006663_090--Hb_000825_030 Hb_001386_140 Hb_001386_140 Hb_006663_090--Hb_001386_140 Hb_115477_010 Hb_115477_010 Hb_006663_090--Hb_115477_010 Hb_006487_060 Hb_006487_060 Hb_006663_090--Hb_006487_060 Hb_183522_010 Hb_183522_010 Hb_007083_020--Hb_183522_010 Hb_007083_020--Hb_106415_010 Hb_003371_170 Hb_003371_170 Hb_007083_020--Hb_003371_170 Hb_007083_020--Hb_019053_010 Hb_005542_090 Hb_005542_090 Hb_007083_020--Hb_005542_090 Hb_019053_010--Hb_106415_010 Hb_009119_020 Hb_009119_020 Hb_019053_010--Hb_009119_020 Hb_000074_060 Hb_000074_060 Hb_019053_010--Hb_000074_060 Hb_019053_010--Hb_115477_010 Hb_003633_040 Hb_003633_040 Hb_019053_010--Hb_003633_040 Hb_099878_050 Hb_099878_050 Hb_106415_010--Hb_099878_050 Hb_033385_010 Hb_033385_010 Hb_106415_010--Hb_033385_010 Hb_007333_040 Hb_007333_040 Hb_106415_010--Hb_007333_040 Hb_106415_010--Hb_000825_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
163.736 94.0524 92.3142 673.558 111.734 1436.92
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
236.302 156.657 112.533 280.361 78.4922

CAGE analysis