Hb_068079_010

Information

Type -
Description -
Location Contig68079: 8264-10015
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53777: 9149-9473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068079_010 0.0 - - -
2 Hb_002828_060 0.0633482076 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
3 Hb_000108_020 0.0656104257 - - hypothetical protein POPTR_0019s02430g [Populus trichocarpa]
4 Hb_000862_100 0.0687399724 - - PREDICTED: plastid division protein CDP1, chloroplastic [Jatropha curcas]
5 Hb_022693_130 0.0739382662 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_000645_180 0.0746748231 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
7 Hb_004705_160 0.0772544669 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
8 Hb_006916_050 0.0772671143 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_002249_080 0.0823403701 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
10 Hb_025194_050 0.0828562716 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
11 Hb_000748_090 0.0853400667 - - glucose inhibited division protein A, putative [Ricinus communis]
12 Hb_000482_050 0.0862018951 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
13 Hb_003490_060 0.0863170775 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic isoform X2 [Sesamum indicum]
14 Hb_006970_020 0.0867037743 - - PREDICTED: DNA topoisomerase 6 subunit B [Jatropha curcas]
15 Hb_000291_180 0.0867690092 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
16 Hb_000007_090 0.0876345817 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
17 Hb_001882_010 0.0878751223 - - -
18 Hb_160271_010 0.0881487844 - - PREDICTED: FAD synthase-like isoform X2 [Jatropha curcas]
19 Hb_002774_190 0.0885935995 - - Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus communis]
20 Hb_000029_400 0.0889134694 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_068079_010 Hb_068079_010 Hb_002828_060 Hb_002828_060 Hb_068079_010--Hb_002828_060 Hb_000108_020 Hb_000108_020 Hb_068079_010--Hb_000108_020 Hb_000862_100 Hb_000862_100 Hb_068079_010--Hb_000862_100 Hb_022693_130 Hb_022693_130 Hb_068079_010--Hb_022693_130 Hb_000645_180 Hb_000645_180 Hb_068079_010--Hb_000645_180 Hb_004705_160 Hb_004705_160 Hb_068079_010--Hb_004705_160 Hb_003490_060 Hb_003490_060 Hb_002828_060--Hb_003490_060 Hb_000482_050 Hb_000482_050 Hb_002828_060--Hb_000482_050 Hb_000510_190 Hb_000510_190 Hb_002828_060--Hb_000510_190 Hb_002249_080 Hb_002249_080 Hb_002828_060--Hb_002249_080 Hb_001140_180 Hb_001140_180 Hb_002828_060--Hb_001140_180 Hb_000085_070 Hb_000085_070 Hb_000108_020--Hb_000085_070 Hb_000108_020--Hb_022693_130 Hb_160271_010 Hb_160271_010 Hb_000108_020--Hb_160271_010 Hb_000108_020--Hb_000645_180 Hb_000480_040 Hb_000480_040 Hb_000108_020--Hb_000480_040 Hb_000862_100--Hb_004705_160 Hb_006970_020 Hb_006970_020 Hb_000862_100--Hb_006970_020 Hb_000815_300 Hb_000815_300 Hb_000862_100--Hb_000815_300 Hb_001159_060 Hb_001159_060 Hb_000862_100--Hb_001159_060 Hb_000406_210 Hb_000406_210 Hb_000862_100--Hb_000406_210 Hb_022693_130--Hb_160271_010 Hb_005062_060 Hb_005062_060 Hb_022693_130--Hb_005062_060 Hb_022693_130--Hb_000645_180 Hb_000107_250 Hb_000107_250 Hb_022693_130--Hb_000107_250 Hb_012779_080 Hb_012779_080 Hb_000645_180--Hb_012779_080 Hb_070624_010 Hb_070624_010 Hb_000645_180--Hb_070624_010 Hb_000320_190 Hb_000320_190 Hb_000645_180--Hb_000320_190 Hb_138585_030 Hb_138585_030 Hb_004705_160--Hb_138585_030 Hb_000208_190 Hb_000208_190 Hb_004705_160--Hb_000208_190 Hb_000748_090 Hb_000748_090 Hb_004705_160--Hb_000748_090 Hb_000788_030 Hb_000788_030 Hb_004705_160--Hb_000788_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.01744 2.38873 5.65231 4.81537 2.06919 1.71064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.89568 1.54035 1.26392 2.95158 6.61483

CAGE analysis