Hb_068569_010

Information

Type -
Description -
Location Contig68569: 229-720
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068569_010 0.0 - - -
2 Hb_013358_100 0.1302220235 - - unknown [Medicago truncatula]
3 Hb_010964_020 0.1497111645 - - RNA helicase [Arabidopsis thaliana]
4 Hb_178620_010 0.1508004616 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
5 Hb_000053_030 0.1535777526 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
6 Hb_065841_010 0.1679168438 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
7 Hb_033385_010 0.1727493065 - - hypothetical protein JCGZ_06094 [Jatropha curcas]
8 Hb_035436_010 0.1796583961 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
9 Hb_013358_090 0.180042358 - - hypothetical protein Csa_4G652025 [Cucumis sativus]
10 Hb_000311_030 0.1843607653 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
11 Hb_142751_010 0.1873349552 - - conserved hypothetical protein [Ricinus communis]
12 Hb_177152_010 0.1885467706 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
13 Hb_001623_300 0.1932527578 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
14 Hb_106415_010 0.1933609704 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
15 Hb_000033_070 0.1934184631 - - unnamed protein product [Oryza sativa Japonica Group]
16 Hb_004935_080 0.2007453271 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
17 Hb_099878_050 0.2048003113 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
18 Hb_008054_050 0.2057823803 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
19 Hb_025905_020 0.2060280068 - - major allergen Pru ar 1-like [Jatropha curcas]
20 Hb_013358_080 0.2065981126 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]

Gene co-expression network

sample Hb_068569_010 Hb_068569_010 Hb_013358_100 Hb_013358_100 Hb_068569_010--Hb_013358_100 Hb_010964_020 Hb_010964_020 Hb_068569_010--Hb_010964_020 Hb_178620_010 Hb_178620_010 Hb_068569_010--Hb_178620_010 Hb_000053_030 Hb_000053_030 Hb_068569_010--Hb_000053_030 Hb_065841_010 Hb_065841_010 Hb_068569_010--Hb_065841_010 Hb_033385_010 Hb_033385_010 Hb_068569_010--Hb_033385_010 Hb_177152_010 Hb_177152_010 Hb_013358_100--Hb_177152_010 Hb_040747_010 Hb_040747_010 Hb_013358_100--Hb_040747_010 Hb_035436_010 Hb_035436_010 Hb_013358_100--Hb_035436_010 Hb_004935_080 Hb_004935_080 Hb_013358_100--Hb_004935_080 Hb_013358_100--Hb_065841_010 Hb_010964_020--Hb_178620_010 Hb_001623_300 Hb_001623_300 Hb_010964_020--Hb_001623_300 Hb_001623_290 Hb_001623_290 Hb_010964_020--Hb_001623_290 Hb_002192_090 Hb_002192_090 Hb_010964_020--Hb_002192_090 Hb_025905_020 Hb_025905_020 Hb_010964_020--Hb_025905_020 Hb_178620_010--Hb_025905_020 Hb_002388_010 Hb_002388_010 Hb_178620_010--Hb_002388_010 Hb_178620_010--Hb_013358_100 Hb_178620_010--Hb_002192_090 Hb_004466_060 Hb_004466_060 Hb_000053_030--Hb_004466_060 Hb_013358_090 Hb_013358_090 Hb_000053_030--Hb_013358_090 Hb_000053_030--Hb_002192_090 Hb_088163_010 Hb_088163_010 Hb_000053_030--Hb_088163_010 Hb_106415_010 Hb_106415_010 Hb_000053_030--Hb_106415_010 Hb_099878_050 Hb_099878_050 Hb_000053_030--Hb_099878_050 Hb_007157_060 Hb_007157_060 Hb_065841_010--Hb_007157_060 Hb_008054_050 Hb_008054_050 Hb_065841_010--Hb_008054_050 Hb_161994_040 Hb_161994_040 Hb_065841_010--Hb_161994_040 Hb_065841_010--Hb_177152_010 Hb_007333_040 Hb_007333_040 Hb_033385_010--Hb_007333_040 Hb_033385_010--Hb_106415_010 Hb_068014_010 Hb_068014_010 Hb_033385_010--Hb_068014_010 Hb_009119_020 Hb_009119_020 Hb_033385_010--Hb_009119_020 Hb_033385_010--Hb_099878_050 Hb_033385_010--Hb_013358_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.318 47.4049 24.1705 246.966 40.3593 179.023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.1968 18.6656 10.0513 27.3921 15.019

CAGE analysis