Hb_068575_010

Information

Type -
Description -
Location Contig68575: 1903-4114
Sequence    

Annotation

kegg
ID rcu:RCOM_0574890
description hypothetical protein
nr
ID XP_012066380.1
description PREDICTED: protein GAMETE EXPRESSED 2 [Jatropha curcas]
swissprot
ID F4K4R6
description Protein GAMETE EXPRESSED 2 OS=Arabidopsis thaliana GN=GEX2 PE=2 SV=1
trembl
ID B9SUU2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0574890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068575_010 0.0 - - PREDICTED: protein GAMETE EXPRESSED 2 [Jatropha curcas]
2 Hb_000635_200 0.1023704863 rubber biosynthesis Gene Name: SRPP5 PREDICTED: REF/SRPP-like protein At1g67360 [Jatropha curcas]
3 Hb_001673_060 0.1076737155 - - PREDICTED: uncharacterized protein LOC105635789 [Jatropha curcas]
4 Hb_003604_050 0.1082524459 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
5 Hb_000479_240 0.1103764052 - - PREDICTED: probable ubiquitin conjugation factor E4 isoform X2 [Jatropha curcas]
6 Hb_043362_010 0.1110720808 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
7 Hb_000352_070 0.1121157607 - - Potassium transporter, putative [Ricinus communis]
8 Hb_004785_030 0.1130460568 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
9 Hb_002119_090 0.113791319 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
10 Hb_004645_070 0.1149124297 - - PREDICTED: beta-1,3-galactosyltransferase 15 [Jatropha curcas]
11 Hb_000856_020 0.1151576571 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
12 Hb_004228_100 0.1156607294 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
13 Hb_000406_110 0.1163350608 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
14 Hb_001904_030 0.1180285673 - - PREDICTED: importin-5 [Jatropha curcas]
15 Hb_000197_030 0.1190662146 - - hypothetical protein RCOM_1447500 [Ricinus communis]
16 Hb_000340_080 0.119102698 - - PREDICTED: isoamylase 2, chloroplastic [Jatropha curcas]
17 Hb_006573_210 0.1195003772 - - PREDICTED: protein SGT1 homolog [Jatropha curcas]
18 Hb_002928_190 0.1195348862 transcription factor TF Family: RWP-RK PREDICTED: protein NLP4 [Jatropha curcas]
19 Hb_000649_250 0.1213206034 transcription factor TF Family: C2H2 PREDICTED: UBX domain-containing protein 6 [Jatropha curcas]
20 Hb_002027_280 0.1224807569 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_068575_010 Hb_068575_010 Hb_000635_200 Hb_000635_200 Hb_068575_010--Hb_000635_200 Hb_001673_060 Hb_001673_060 Hb_068575_010--Hb_001673_060 Hb_003604_050 Hb_003604_050 Hb_068575_010--Hb_003604_050 Hb_000479_240 Hb_000479_240 Hb_068575_010--Hb_000479_240 Hb_043362_010 Hb_043362_010 Hb_068575_010--Hb_043362_010 Hb_000352_070 Hb_000352_070 Hb_068575_010--Hb_000352_070 Hb_004645_070 Hb_004645_070 Hb_000635_200--Hb_004645_070 Hb_002092_070 Hb_002092_070 Hb_000635_200--Hb_002092_070 Hb_000010_420 Hb_000010_420 Hb_000635_200--Hb_000010_420 Hb_002045_250 Hb_002045_250 Hb_000635_200--Hb_002045_250 Hb_004429_010 Hb_004429_010 Hb_000635_200--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000635_200--Hb_002284_170 Hb_000340_080 Hb_000340_080 Hb_001673_060--Hb_000340_080 Hb_022425_060 Hb_022425_060 Hb_001673_060--Hb_022425_060 Hb_005649_080 Hb_005649_080 Hb_001673_060--Hb_005649_080 Hb_000656_150 Hb_000656_150 Hb_001673_060--Hb_000656_150 Hb_010661_010 Hb_010661_010 Hb_001673_060--Hb_010661_010 Hb_004128_030 Hb_004128_030 Hb_001673_060--Hb_004128_030 Hb_001904_030 Hb_001904_030 Hb_003604_050--Hb_001904_030 Hb_001341_160 Hb_001341_160 Hb_003604_050--Hb_001341_160 Hb_003604_050--Hb_000479_240 Hb_005832_010 Hb_005832_010 Hb_003604_050--Hb_005832_010 Hb_002928_190 Hb_002928_190 Hb_003604_050--Hb_002928_190 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030 Hb_005568_040 Hb_005568_040 Hb_000479_240--Hb_005568_040 Hb_000479_240--Hb_001904_030 Hb_009252_050 Hb_009252_050 Hb_000479_240--Hb_009252_050 Hb_000008_240 Hb_000008_240 Hb_000479_240--Hb_000008_240 Hb_000479_240--Hb_004645_070 Hb_002960_080 Hb_002960_080 Hb_043362_010--Hb_002960_080 Hb_001188_020 Hb_001188_020 Hb_043362_010--Hb_001188_020 Hb_002007_110 Hb_002007_110 Hb_043362_010--Hb_002007_110 Hb_003912_070 Hb_003912_070 Hb_043362_010--Hb_003912_070 Hb_003581_170 Hb_003581_170 Hb_043362_010--Hb_003581_170 Hb_003805_040 Hb_003805_040 Hb_043362_010--Hb_003805_040 Hb_002027_280 Hb_002027_280 Hb_000352_070--Hb_002027_280 Hb_134362_010 Hb_134362_010 Hb_000352_070--Hb_134362_010 Hb_000949_020 Hb_000949_020 Hb_000352_070--Hb_000949_020 Hb_000352_070--Hb_004429_010 Hb_000352_070--Hb_002284_170 Hb_000352_070--Hb_004785_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197978 1.10793 0.455192 0.769875 0.412584 0.665004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.266665 0.125834 0.307965 0.371472 0.513299

CAGE analysis