Hb_068580_010

Information

Type -
Description -
Location Contig68580: 6225-11672
Sequence    

Annotation

kegg
ID pop:POPTR_0006s18770g
description hypothetical protein
nr
ID XP_011012684.1
description PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
swissprot
ID Q5XF57
description Probable receptor-like serine/threonine-protein kinase At5g57670 OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1
trembl
ID A0A067L5R6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23009 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable receptor-like serine threonine-protein kinase at5g57670

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54109: 6339-6711 , PASA_asmbl_54110: 6895-11663
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068580_010 0.0 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
2 Hb_004993_020 0.0423401593 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
3 Hb_003734_070 0.0431927138 - - chlorophyll A/B binding protein, putative [Ricinus communis]
4 Hb_000557_070 0.045501839 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
5 Hb_000731_150 0.0477472299 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
6 Hb_000077_020 0.0508786094 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004880_020 0.0530930476 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
8 Hb_002328_080 0.0548452007 - - short-chain dehydrogenase, putative [Ricinus communis]
9 Hb_003086_140 0.056378763 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
10 Hb_004724_090 0.0580340342 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
11 Hb_009588_010 0.0599253823 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
12 Hb_000333_010 0.0608590453 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
13 Hb_001507_060 0.0651064284 - - translation initiation factor eif-2b gamma subunit, putative [Ricinus communis]
14 Hb_004735_030 0.0670580361 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
15 Hb_001519_140 0.0683528366 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Vitis vinifera]
16 Hb_001205_220 0.0685860879 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000512_120 0.0692962359 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
18 Hb_000010_160 0.0702874938 - - Uncharacterized protein TCM_014508 [Theobroma cacao]
19 Hb_001534_060 0.0704730901 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
20 Hb_002043_020 0.0704779395 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]

Gene co-expression network

sample Hb_068580_010 Hb_068580_010 Hb_004993_020 Hb_004993_020 Hb_068580_010--Hb_004993_020 Hb_003734_070 Hb_003734_070 Hb_068580_010--Hb_003734_070 Hb_000557_070 Hb_000557_070 Hb_068580_010--Hb_000557_070 Hb_000731_150 Hb_000731_150 Hb_068580_010--Hb_000731_150 Hb_000077_020 Hb_000077_020 Hb_068580_010--Hb_000077_020 Hb_004880_020 Hb_004880_020 Hb_068580_010--Hb_004880_020 Hb_001519_140 Hb_001519_140 Hb_004993_020--Hb_001519_140 Hb_003086_140 Hb_003086_140 Hb_004993_020--Hb_003086_140 Hb_004993_020--Hb_000731_150 Hb_004993_020--Hb_000557_070 Hb_000010_160 Hb_000010_160 Hb_004993_020--Hb_000010_160 Hb_003734_070--Hb_000077_020 Hb_003734_070--Hb_004880_020 Hb_009588_010 Hb_009588_010 Hb_003734_070--Hb_009588_010 Hb_009233_020 Hb_009233_020 Hb_003734_070--Hb_009233_020 Hb_009225_060 Hb_009225_060 Hb_003734_070--Hb_009225_060 Hb_004724_090 Hb_004724_090 Hb_000557_070--Hb_004724_090 Hb_006117_030 Hb_006117_030 Hb_000557_070--Hb_006117_030 Hb_000557_070--Hb_000731_150 Hb_002743_010 Hb_002743_010 Hb_000557_070--Hb_002743_010 Hb_001205_220 Hb_001205_220 Hb_000731_150--Hb_001205_220 Hb_000731_150--Hb_002743_010 Hb_000731_150--Hb_001519_140 Hb_000077_020--Hb_004880_020 Hb_000077_020--Hb_009233_020 Hb_000077_020--Hb_009225_060 Hb_001507_060 Hb_001507_060 Hb_000077_020--Hb_001507_060 Hb_004880_020--Hb_009225_060 Hb_004880_020--Hb_009233_020 Hb_001426_020 Hb_001426_020 Hb_004880_020--Hb_001426_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0158365 0.0496202 18.6239 12.0807 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0141425 0 0.0561668 22.6883

CAGE analysis