Hb_068804_030

Information

Type -
Description -
Location Contig68804: 11288-17308
Sequence    

Annotation

kegg
ID pop:POPTR_0015s04140g
description POPTRDRAFT_251420; glycine-rich family protein
nr
ID XP_012079527.1
description PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
swissprot
ID Q9ZQ47
description Glycine-rich domain-containing protein 1 OS=Arabidopsis thaliana GN=GRDP1 PE=2 SV=1
trembl
ID A0A067K7S8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12623 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54118: 11006-14101 , PASA_asmbl_54120: 14280-18474
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_030 0.0 - - PREDICTED: uncharacterized protein LOC105639932 [Jatropha curcas]
2 Hb_006789_020 0.0918244272 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase-like 22 [Camelina sativa]
3 Hb_003030_050 0.137738758 - - -
4 Hb_024570_030 0.1417353243 - - cytochrome P450, putative [Ricinus communis]
5 Hb_002701_170 0.1430366722 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
6 Hb_110737_010 0.1479919451 - - PREDICTED: aldose 1-epimerase-like [Jatropha curcas]
7 Hb_002835_050 0.1487352563 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
8 Hb_000072_110 0.1546421591 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
9 Hb_002701_060 0.1570179407 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005155_030 0.1606281397 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
11 Hb_003095_110 0.1620794736 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
12 Hb_006053_020 0.1631335707 - - CAP [Theobroma cacao]
13 Hb_004487_060 0.1645130225 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000560_060 0.1669092634 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
15 Hb_119443_010 0.1675585877 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
16 Hb_026419_010 0.167790687 - - PREDICTED: cyclin-D3-1-like [Jatropha curcas]
17 Hb_000907_130 0.1702409059 - - -
18 Hb_004392_030 0.1732712657 - - oxidoreductase family protein [Populus trichocarpa]
19 Hb_002876_100 0.1752501397 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
20 Hb_012539_080 0.1770649153 - - Polyprotein, putative [Solanum demissum]

Gene co-expression network

sample Hb_068804_030 Hb_068804_030 Hb_006789_020 Hb_006789_020 Hb_068804_030--Hb_006789_020 Hb_003030_050 Hb_003030_050 Hb_068804_030--Hb_003030_050 Hb_024570_030 Hb_024570_030 Hb_068804_030--Hb_024570_030 Hb_002701_170 Hb_002701_170 Hb_068804_030--Hb_002701_170 Hb_110737_010 Hb_110737_010 Hb_068804_030--Hb_110737_010 Hb_002835_050 Hb_002835_050 Hb_068804_030--Hb_002835_050 Hb_006789_020--Hb_002701_170 Hb_002151_150 Hb_002151_150 Hb_006789_020--Hb_002151_150 Hb_002701_060 Hb_002701_060 Hb_006789_020--Hb_002701_060 Hb_010678_010 Hb_010678_010 Hb_006789_020--Hb_010678_010 Hb_026419_010 Hb_026419_010 Hb_006789_020--Hb_026419_010 Hb_097783_030 Hb_097783_030 Hb_003030_050--Hb_097783_030 Hb_003030_050--Hb_002835_050 Hb_000907_130 Hb_000907_130 Hb_003030_050--Hb_000907_130 Hb_005155_030 Hb_005155_030 Hb_003030_050--Hb_005155_030 Hb_003030_050--Hb_110737_010 Hb_001369_270 Hb_001369_270 Hb_003030_050--Hb_001369_270 Hb_039435_010 Hb_039435_010 Hb_024570_030--Hb_039435_010 Hb_006053_020 Hb_006053_020 Hb_024570_030--Hb_006053_020 Hb_024570_030--Hb_002701_060 Hb_000072_110 Hb_000072_110 Hb_024570_030--Hb_000072_110 Hb_024570_030--Hb_002701_170 Hb_000164_110 Hb_000164_110 Hb_024570_030--Hb_000164_110 Hb_002701_170--Hb_002701_060 Hb_000560_060 Hb_000560_060 Hb_002701_170--Hb_000560_060 Hb_002701_170--Hb_010678_010 Hb_002701_170--Hb_000072_110 Hb_002701_170--Hb_002151_150 Hb_001109_170 Hb_001109_170 Hb_110737_010--Hb_001109_170 Hb_000567_150 Hb_000567_150 Hb_110737_010--Hb_000567_150 Hb_110737_010--Hb_001369_270 Hb_004487_060 Hb_004487_060 Hb_110737_010--Hb_004487_060 Hb_001288_050 Hb_001288_050 Hb_110737_010--Hb_001288_050 Hb_002835_050--Hb_000907_130 Hb_002835_050--Hb_005155_030 Hb_002835_050--Hb_097783_030 Hb_012539_080 Hb_012539_080 Hb_002835_050--Hb_012539_080 Hb_004392_030 Hb_004392_030 Hb_002835_050--Hb_004392_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.390195 0.176413 0 0.00743864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0141113 0 0.470754 0.86959

CAGE analysis