Hb_068804_070

Information

Type -
Description -
Location Contig68804: 38669-49114
Sequence    

Annotation

kegg
ID rcu:RCOM_0230590
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25)
nr
ID KDP32166.1
description hypothetical protein JCGZ_12627 [Jatropha curcas]
swissprot
ID Q8L4H4
description Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2
trembl
ID A0A067K7E8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12627 PE=3 SV=1
Gene Ontology
ID GO:0005622
description nodulation receptor kinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54121: 40546-49111
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_070 0.0 - - hypothetical protein JCGZ_12627 [Jatropha curcas]
2 Hb_005743_010 0.0831768006 - - RING/U-box superfamily protein, putative [Theobroma cacao]
3 Hb_003592_060 0.0937442312 - - hypothetical protein F383_11017 [Gossypium arboreum]
4 Hb_006266_010 0.1166857624 - - unnamed protein product [Vitis vinifera]
5 Hb_000471_030 0.1180851255 - - -
6 Hb_004316_080 0.1198902052 - - PREDICTED: uncharacterized protein LOC104602212 [Nelumbo nucifera]
7 Hb_002217_060 0.1224522015 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
8 Hb_000018_120 0.1229038205 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_000567_060 0.126568284 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
10 Hb_006294_030 0.1275233809 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_022092_050 0.1284317035 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
12 Hb_001634_030 0.1333095727 - - Receptor like protein 1, putative [Theobroma cacao]
13 Hb_001284_070 0.133417219 - - conserved hypothetical protein [Ricinus communis]
14 Hb_137272_010 0.135192737 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
15 Hb_000941_010 0.1401290626 - - hypothetical protein RCOM_0504460 [Ricinus communis]
16 Hb_012691_010 0.1404591827 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
17 Hb_004551_050 0.1445765669 - - PREDICTED: glucose-6-phosphate/phosphate translocator 2, chloroplastic [Jatropha curcas]
18 Hb_006615_220 0.1493150212 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
19 Hb_000152_770 0.1500112799 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
20 Hb_002984_040 0.1509742694 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_068804_070 Hb_068804_070 Hb_005743_010 Hb_005743_010 Hb_068804_070--Hb_005743_010 Hb_003592_060 Hb_003592_060 Hb_068804_070--Hb_003592_060 Hb_006266_010 Hb_006266_010 Hb_068804_070--Hb_006266_010 Hb_000471_030 Hb_000471_030 Hb_068804_070--Hb_000471_030 Hb_004316_080 Hb_004316_080 Hb_068804_070--Hb_004316_080 Hb_002217_060 Hb_002217_060 Hb_068804_070--Hb_002217_060 Hb_005743_010--Hb_003592_060 Hb_005743_010--Hb_006266_010 Hb_006615_220 Hb_006615_220 Hb_005743_010--Hb_006615_220 Hb_007643_060 Hb_007643_060 Hb_005743_010--Hb_007643_060 Hb_007951_020 Hb_007951_020 Hb_005743_010--Hb_007951_020 Hb_003592_060--Hb_006266_010 Hb_009693_010 Hb_009693_010 Hb_003592_060--Hb_009693_010 Hb_003592_060--Hb_002217_060 Hb_000018_120 Hb_000018_120 Hb_003592_060--Hb_000018_120 Hb_006266_010--Hb_009693_010 Hb_006266_010--Hb_006615_220 Hb_137272_010 Hb_137272_010 Hb_006266_010--Hb_137272_010 Hb_006294_030 Hb_006294_030 Hb_000471_030--Hb_006294_030 Hb_012691_010 Hb_012691_010 Hb_000471_030--Hb_012691_010 Hb_004316_160 Hb_004316_160 Hb_000471_030--Hb_004316_160 Hb_000471_030--Hb_005743_010 Hb_001634_030 Hb_001634_030 Hb_000471_030--Hb_001634_030 Hb_006316_090 Hb_006316_090 Hb_004316_080--Hb_006316_090 Hb_004607_020 Hb_004607_020 Hb_004316_080--Hb_004607_020 Hb_001649_050 Hb_001649_050 Hb_004316_080--Hb_001649_050 Hb_004316_080--Hb_007951_020 Hb_004316_080--Hb_005743_010 Hb_001476_030 Hb_001476_030 Hb_004316_080--Hb_001476_030 Hb_023771_030 Hb_023771_030 Hb_002217_060--Hb_023771_030 Hb_001284_070 Hb_001284_070 Hb_002217_060--Hb_001284_070 Hb_020273_010 Hb_020273_010 Hb_002217_060--Hb_020273_010 Hb_001310_060 Hb_001310_060 Hb_002217_060--Hb_001310_060 Hb_002851_070 Hb_002851_070 Hb_002217_060--Hb_002851_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00773505 2.12947 16.6954 4.46626 0.0175544 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0283555 0.0111569 0.0213498 8.64558 3.04814

CAGE analysis