Hb_068804_100

Information

Type -
Description -
Location Contig68804: 68652-70084
Sequence    

Annotation

kegg
ID rcu:RCOM_1032260
description Caldesmon, putative
nr
ID XP_012077637.1
description PREDICTED: surfeit locus protein 6 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KNG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12893 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54126: 67513-67792 , PASA_asmbl_54127: 68858-69343
cDNA
(Sanger)
(ID:Location)		 040_K09r.ab1: 70023-71118

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_100 0.0 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
2 Hb_001019_190 0.1108801876 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007811_030 0.1166235712 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_002805_270 0.1174188551 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_008096_010 0.1177728596 - - hypothetical protein MTR_1g045660 [Medicago truncatula]
6 Hb_012627_030 0.1285553195 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
7 Hb_000819_080 0.1295442974 - - Plastid-lipid-associated protein, chloroplast precursor, putative [Ricinus communis]
8 Hb_000236_240 0.1309226992 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
9 Hb_008785_040 0.1340652742 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
10 Hb_000302_180 0.1341072167 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002749_090 0.1352498985 - - -
12 Hb_001811_140 0.1372222723 - - hypothetical protein POPTR_0007s03140g [Populus trichocarpa]
13 Hb_002835_240 0.1372876546 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
14 Hb_001136_100 0.1374776934 - - hypothetical protein MTR_085s0013 [Medicago truncatula]
15 Hb_006120_070 0.1381863689 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
16 Hb_001703_030 0.1392278095 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
17 Hb_111985_050 0.1392845667 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
18 Hb_003939_050 0.1411717829 - - protein with unknown function [Ricinus communis]
19 Hb_000080_120 0.1415566858 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
20 Hb_002681_070 0.1416307928 - - PREDICTED: uncharacterized protein LOC105633833 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_068804_100 Hb_068804_100 Hb_001019_190 Hb_001019_190 Hb_068804_100--Hb_001019_190 Hb_007811_030 Hb_007811_030 Hb_068804_100--Hb_007811_030 Hb_002805_270 Hb_002805_270 Hb_068804_100--Hb_002805_270 Hb_008096_010 Hb_008096_010 Hb_068804_100--Hb_008096_010 Hb_012627_030 Hb_012627_030 Hb_068804_100--Hb_012627_030 Hb_000819_080 Hb_000819_080 Hb_068804_100--Hb_000819_080 Hb_002681_070 Hb_002681_070 Hb_001019_190--Hb_002681_070 Hb_001019_190--Hb_000819_080 Hb_024570_010 Hb_024570_010 Hb_001019_190--Hb_024570_010 Hb_000739_310 Hb_000739_310 Hb_001019_190--Hb_000739_310 Hb_000173_290 Hb_000173_290 Hb_001019_190--Hb_000173_290 Hb_000796_220 Hb_000796_220 Hb_001019_190--Hb_000796_220 Hb_000915_260 Hb_000915_260 Hb_007811_030--Hb_000915_260 Hb_001971_010 Hb_001971_010 Hb_007811_030--Hb_001971_010 Hb_007811_030--Hb_008096_010 Hb_000054_090 Hb_000054_090 Hb_007811_030--Hb_000054_090 Hb_007811_030--Hb_000173_290 Hb_001348_180 Hb_001348_180 Hb_007811_030--Hb_001348_180 Hb_028227_020 Hb_028227_020 Hb_002805_270--Hb_028227_020 Hb_000690_130 Hb_000690_130 Hb_002805_270--Hb_000690_130 Hb_004182_040 Hb_004182_040 Hb_002805_270--Hb_004182_040 Hb_000058_100 Hb_000058_100 Hb_002805_270--Hb_000058_100 Hb_005697_060 Hb_005697_060 Hb_002805_270--Hb_005697_060 Hb_004414_060 Hb_004414_060 Hb_002805_270--Hb_004414_060 Hb_002276_170 Hb_002276_170 Hb_008096_010--Hb_002276_170 Hb_018133_040 Hb_018133_040 Hb_008096_010--Hb_018133_040 Hb_000236_240 Hb_000236_240 Hb_008096_010--Hb_000236_240 Hb_001632_040 Hb_001632_040 Hb_008096_010--Hb_001632_040 Hb_008096_010--Hb_001019_190 Hb_012627_030--Hb_007811_030 Hb_000300_160 Hb_000300_160 Hb_012627_030--Hb_000300_160 Hb_004369_020 Hb_004369_020 Hb_012627_030--Hb_004369_020 Hb_000046_320 Hb_000046_320 Hb_012627_030--Hb_000046_320 Hb_111985_050 Hb_111985_050 Hb_012627_030--Hb_111985_050 Hb_000302_180 Hb_000302_180 Hb_000819_080--Hb_000302_180 Hb_003939_050 Hb_003939_050 Hb_000819_080--Hb_003939_050 Hb_000819_080--Hb_002681_070 Hb_030736_100 Hb_030736_100 Hb_000819_080--Hb_030736_100 Hb_004155_010 Hb_004155_010 Hb_000819_080--Hb_004155_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19199 0.146431 0.672579 0.392003 1.52131 0.62658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.765981 0.979008 0.834133 0.635299 1.08189

CAGE analysis