Hb_068804_110

Information

Type -
Description -
Location Contig68804: 70285-76376
Sequence    

Annotation

kegg
ID rcu:RCOM_0230740
description serine hydroxymethyltransferase, putative (EC:2.1.2.1)
nr
ID XP_012079535.1
description PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
swissprot
ID P50433
description Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067KK26
description Serine hydroxymethyltransferase OS=Jatropha curcas GN=JCGZ_12630 PE=3 SV=1
Gene Ontology
ID GO:0005634
description serine mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54128: 70023-76148 , PASA_asmbl_54129: 74453-74571 , PASA_asmbl_54130: 73303-73420
cDNA
(Sanger)
(ID:Location)		 040_K09.ab1: 70023-71141

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_110 0.0 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
2 Hb_007595_020 0.0728294573 - - maturase K [Hevea brasiliensis]
3 Hb_012940_020 0.0879644506 - - zeaxanthin epoxidase, putative [Ricinus communis]
4 Hb_156850_020 0.0930026321 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
5 Hb_001610_100 0.0944636333 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
6 Hb_001085_200 0.094626061 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
7 Hb_028960_010 0.0947473856 - - phosphoglycerate kinase, putative [Ricinus communis]
8 Hb_001951_040 0.096684801 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
9 Hb_106552_030 0.0990722856 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
10 Hb_000367_220 0.1013203439 - - hypothetical protein RCOM_1470580 [Ricinus communis]
11 Hb_010080_070 0.1047203638 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
12 Hb_000992_090 0.1067423161 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
13 Hb_004920_080 0.1133758274 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
14 Hb_000009_470 0.1152435063 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
15 Hb_029622_060 0.1163945331 - - PREDICTED: putative lipase ROG1 isoform X1 [Jatropha curcas]
16 Hb_002413_050 0.1169995551 - - hypothetical protein POPTR_0018s06150g [Populus trichocarpa]
17 Hb_001135_190 0.1170393584 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
18 Hb_054865_040 0.1171721962 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
19 Hb_010021_040 0.1178453705 - - PREDICTED: uncharacterized protein LOC105630811 [Jatropha curcas]
20 Hb_001053_050 0.1186991489 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]

Gene co-expression network

sample Hb_068804_110 Hb_068804_110 Hb_007595_020 Hb_007595_020 Hb_068804_110--Hb_007595_020 Hb_012940_020 Hb_012940_020 Hb_068804_110--Hb_012940_020 Hb_156850_020 Hb_156850_020 Hb_068804_110--Hb_156850_020 Hb_001610_100 Hb_001610_100 Hb_068804_110--Hb_001610_100 Hb_001085_200 Hb_001085_200 Hb_068804_110--Hb_001085_200 Hb_028960_010 Hb_028960_010 Hb_068804_110--Hb_028960_010 Hb_000367_220 Hb_000367_220 Hb_007595_020--Hb_000367_220 Hb_002044_070 Hb_002044_070 Hb_007595_020--Hb_002044_070 Hb_005228_060 Hb_005228_060 Hb_007595_020--Hb_005228_060 Hb_000009_470 Hb_000009_470 Hb_007595_020--Hb_000009_470 Hb_029622_060 Hb_029622_060 Hb_007595_020--Hb_029622_060 Hb_012940_020--Hb_028960_010 Hb_012940_020--Hb_156850_020 Hb_003336_020 Hb_003336_020 Hb_012940_020--Hb_003336_020 Hb_106552_030 Hb_106552_030 Hb_012940_020--Hb_106552_030 Hb_000359_070 Hb_000359_070 Hb_012940_020--Hb_000359_070 Hb_156850_020--Hb_106552_030 Hb_010080_070 Hb_010080_070 Hb_156850_020--Hb_010080_070 Hb_156850_020--Hb_028960_010 Hb_011900_020 Hb_011900_020 Hb_156850_020--Hb_011900_020 Hb_156850_020--Hb_000359_070 Hb_000832_050 Hb_000832_050 Hb_001610_100--Hb_000832_050 Hb_007101_090 Hb_007101_090 Hb_001610_100--Hb_007101_090 Hb_003947_020 Hb_003947_020 Hb_001610_100--Hb_003947_020 Hb_003732_030 Hb_003732_030 Hb_001610_100--Hb_003732_030 Hb_001001_130 Hb_001001_130 Hb_001610_100--Hb_001001_130 Hb_003253_030 Hb_003253_030 Hb_001085_200--Hb_003253_030 Hb_001146_030 Hb_001146_030 Hb_001085_200--Hb_001146_030 Hb_003622_050 Hb_003622_050 Hb_001085_200--Hb_003622_050 Hb_002188_150 Hb_002188_150 Hb_001085_200--Hb_002188_150 Hb_054865_040 Hb_054865_040 Hb_001085_200--Hb_054865_040 Hb_001691_180 Hb_001691_180 Hb_028960_010--Hb_001691_180 Hb_028960_010--Hb_000359_070 Hb_028960_010--Hb_106552_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.912739 4.9597 31.4449 30.187 1.16982 2.45137
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.05923 0.990726 1.28588 3.3564 238.75

CAGE analysis