Hb_068804_150

Information

Type -
Description -
Location Contig68804: 101285-101566
Sequence    

Annotation

kegg
ID rcu:RCOM_0230760
description hypothetical protein
nr
ID XP_002527227.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SMK8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0230760 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54132: 101114-101752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_150 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_029921_010 0.1522143399 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
3 Hb_000390_200 0.1693733216 - - PREDICTED: uncharacterized protein LOC105632462 [Jatropha curcas]
4 Hb_005271_170 0.1703481381 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
5 Hb_019033_010 0.1754451431 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
6 Hb_000699_110 0.1784648629 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
7 Hb_000065_080 0.1820230261 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
8 Hb_007904_090 0.1833495325 - - PREDICTED: uncharacterized protein LOC100261196 [Vitis vinifera]
9 Hb_003371_180 0.1842210256 - - -
10 Hb_001002_040 0.1864067276 - - PREDICTED: ATP-citrate synthase beta chain protein 2 [Gossypium raimondii]
11 Hb_002900_140 0.1882536222 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
12 Hb_000175_040 0.1895631184 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
13 Hb_000705_300 0.1905024337 - - PREDICTED: probable protein phosphatase 2C 24 [Jatropha curcas]
14 Hb_002603_130 0.1925522429 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
15 Hb_000723_090 0.1946133425 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000621_060 0.1946986333 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
17 Hb_004712_180 0.1956753216 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006501_110 0.2015275563 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X1 [Jatropha curcas]
19 Hb_113739_010 0.204116063 - - hypothetical protein JCGZ_06379 [Jatropha curcas]
20 Hb_002301_290 0.208197043 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_068804_150 Hb_068804_150 Hb_029921_010 Hb_029921_010 Hb_068804_150--Hb_029921_010 Hb_000390_200 Hb_000390_200 Hb_068804_150--Hb_000390_200 Hb_005271_170 Hb_005271_170 Hb_068804_150--Hb_005271_170 Hb_019033_010 Hb_019033_010 Hb_068804_150--Hb_019033_010 Hb_000699_110 Hb_000699_110 Hb_068804_150--Hb_000699_110 Hb_000065_080 Hb_000065_080 Hb_068804_150--Hb_000065_080 Hb_002900_140 Hb_002900_140 Hb_029921_010--Hb_002900_140 Hb_000982_110 Hb_000982_110 Hb_029921_010--Hb_000982_110 Hb_000997_270 Hb_000997_270 Hb_029921_010--Hb_000997_270 Hb_001005_090 Hb_001005_090 Hb_029921_010--Hb_001005_090 Hb_005892_060 Hb_005892_060 Hb_029921_010--Hb_005892_060 Hb_000179_170 Hb_000179_170 Hb_000390_200--Hb_000179_170 Hb_001416_010 Hb_001416_010 Hb_000390_200--Hb_001416_010 Hb_006501_110 Hb_006501_110 Hb_000390_200--Hb_006501_110 Hb_004899_050 Hb_004899_050 Hb_000390_200--Hb_004899_050 Hb_002301_290 Hb_002301_290 Hb_000390_200--Hb_002301_290 Hb_011310_190 Hb_011310_190 Hb_000390_200--Hb_011310_190 Hb_001047_010 Hb_001047_010 Hb_005271_170--Hb_001047_010 Hb_000184_040 Hb_000184_040 Hb_005271_170--Hb_000184_040 Hb_023988_020 Hb_023988_020 Hb_005271_170--Hb_023988_020 Hb_003453_010 Hb_003453_010 Hb_005271_170--Hb_003453_010 Hb_002400_220 Hb_002400_220 Hb_005271_170--Hb_002400_220 Hb_001269_150 Hb_001269_150 Hb_005271_170--Hb_001269_150 Hb_019033_010--Hb_000699_110 Hb_004502_080 Hb_004502_080 Hb_019033_010--Hb_004502_080 Hb_001437_050 Hb_001437_050 Hb_019033_010--Hb_001437_050 Hb_000175_040 Hb_000175_040 Hb_019033_010--Hb_000175_040 Hb_074197_010 Hb_074197_010 Hb_019033_010--Hb_074197_010 Hb_025246_010 Hb_025246_010 Hb_000699_110--Hb_025246_010 Hb_001623_240 Hb_001623_240 Hb_000699_110--Hb_001623_240 Hb_000261_510 Hb_000261_510 Hb_000699_110--Hb_000261_510 Hb_000699_110--Hb_000175_040 Hb_003057_050 Hb_003057_050 Hb_000699_110--Hb_003057_050 Hb_004724_140 Hb_004724_140 Hb_000699_110--Hb_004724_140 Hb_003874_020 Hb_003874_020 Hb_000065_080--Hb_003874_020 Hb_002107_160 Hb_002107_160 Hb_000065_080--Hb_002107_160 Hb_001009_040 Hb_001009_040 Hb_000065_080--Hb_001009_040 Hb_000621_060 Hb_000621_060 Hb_000065_080--Hb_000621_060 Hb_025236_040 Hb_025236_040 Hb_000065_080--Hb_025236_040 Hb_001278_110 Hb_001278_110 Hb_000065_080--Hb_001278_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
268.83 48.1174 36.9789 118.537 158.268 231.865
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
495.457 217.699 21.4693 13.7584 92.3728

CAGE analysis