Hb_068804_160

Information

Type transcription factor
Description TF Family: MIKC
Location Contig68804: 105877-113527
Sequence    

Annotation

kegg
ID tcc:TCM_000931
description AGAMOUS-like 21, putative
nr
ID KDP32171.1
description hypothetical protein JCGZ_12632 [Jatropha curcas]
swissprot
ID Q9SZJ6
description Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1
trembl
ID A0A067K7F5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12632 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box transcription factor 23 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_160 0.0 transcription factor TF Family: MIKC hypothetical protein JCGZ_12632 [Jatropha curcas]
2 Hb_136696_010 0.0127151777 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_002779_020 0.0135531687 - - transcription factor, putative [Ricinus communis]
4 Hb_115350_010 0.0140042705 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
5 Hb_061390_010 0.0155466925 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
6 Hb_008880_010 0.0156762976 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-8 isoform X2 [Nelumbo nucifera]
7 Hb_004304_050 0.1435487255 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
8 Hb_005183_160 0.1480087758 - - -
9 Hb_003918_040 0.1543405779 - - -
10 Hb_001798_050 0.170305887 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
11 Hb_001824_060 0.2971565942 - - -
12 Hb_000215_170 0.3141656004 - - PREDICTED: uncharacterized protein LOC102596491 [Solanum tuberosum]
13 Hb_000011_170 0.3153846918 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
14 Hb_010504_010 0.3448569954 - - 40S ribosomal protein S15C [Hevea brasiliensis]
15 Hb_153231_040 0.3549409973 - - -
16 Hb_004631_120 0.3758213115 - - conserved hypothetical protein [Ricinus communis]
17 Hb_102438_010 0.379856341 - - -
18 Hb_000007_050 0.4027186473 - - -
19 Hb_000075_050 0.4027186473 - - -
20 Hb_000076_010 0.4027186473 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]

Gene co-expression network

sample Hb_068804_160 Hb_068804_160 Hb_136696_010 Hb_136696_010 Hb_068804_160--Hb_136696_010 Hb_002779_020 Hb_002779_020 Hb_068804_160--Hb_002779_020 Hb_115350_010 Hb_115350_010 Hb_068804_160--Hb_115350_010 Hb_061390_010 Hb_061390_010 Hb_068804_160--Hb_061390_010 Hb_008880_010 Hb_008880_010 Hb_068804_160--Hb_008880_010 Hb_004304_050 Hb_004304_050 Hb_068804_160--Hb_004304_050 Hb_136696_010--Hb_002779_020 Hb_136696_010--Hb_115350_010 Hb_136696_010--Hb_061390_010 Hb_136696_010--Hb_008880_010 Hb_136696_010--Hb_004304_050 Hb_002779_020--Hb_115350_010 Hb_002779_020--Hb_061390_010 Hb_002779_020--Hb_008880_010 Hb_002779_020--Hb_004304_050 Hb_115350_010--Hb_061390_010 Hb_115350_010--Hb_008880_010 Hb_115350_010--Hb_004304_050 Hb_061390_010--Hb_008880_010 Hb_061390_010--Hb_004304_050 Hb_008880_010--Hb_004304_050 Hb_005183_160 Hb_005183_160 Hb_004304_050--Hb_005183_160 Hb_003918_040 Hb_003918_040 Hb_004304_050--Hb_003918_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0327531 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0805846 0 0 0 0

CAGE analysis