Hb_068804_170

Information

Type -
Description -
Location Contig68804: 118409-122489
Sequence    

Annotation

kegg
ID rcu:RCOM_0231080
description lyase, putative
nr
ID XP_012079599.1
description PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
swissprot
ID Q8RJP2
description Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1
trembl
ID A0A067K7U1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12633 PE=4 SV=1
Gene Ontology
ID GO:0016829
description probable rhamnogalacturonate lyase b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54133: 119266-120491 , PASA_asmbl_54134: 120927-121691
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_170 0.0 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
2 Hb_000002_190 0.0371811485 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
3 Hb_000003_520 0.0371811485 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
4 Hb_000005_170 0.0371811485 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
5 Hb_000009_230 0.0371811485 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
6 Hb_000011_110 0.0371811485 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
7 Hb_000012_390 0.0371811485 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000018_070 0.0371811485 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
9 Hb_000020_130 0.0371811485 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]
10 Hb_000024_090 0.0371811485 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000025_560 0.0371811485 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
12 Hb_000028_310 0.0371811485 - - PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
13 Hb_000037_140 0.0371811485 - - PREDICTED: uncharacterized protein LOC104586896 [Nelumbo nucifera]
14 Hb_000046_420 0.0371811485 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
15 Hb_000054_180 0.0371811485 - - PREDICTED: uncharacterized protein LOC105636626 [Jatropha curcas]
16 Hb_000069_450 0.0371811485 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
17 Hb_000076_230 0.0371811485 - - PREDICTED: uncharacterized protein LOC105647061, partial [Jatropha curcas]
18 Hb_000080_090 0.0371811485 - - -
19 Hb_000085_020 0.0371811485 - - PREDICTED: mitochondrial pyruvate carrier 4 [Jatropha curcas]
20 Hb_000094_220 0.0371811485 - - hypothetical protein CISIN_1g038517mg [Citrus sinensis]

Gene co-expression network

sample Hb_068804_170 Hb_068804_170 Hb_000002_190 Hb_000002_190 Hb_068804_170--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_068804_170--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_068804_170--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_068804_170--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_068804_170--Hb_000011_110 Hb_000012_390 Hb_000012_390 Hb_068804_170--Hb_000012_390 Hb_000002_190--Hb_000003_520 Hb_000002_190--Hb_000005_170 Hb_000002_190--Hb_000009_230 Hb_000002_190--Hb_000011_110 Hb_000002_190--Hb_000012_390 Hb_000018_070 Hb_000018_070 Hb_000002_190--Hb_000018_070 Hb_000002_190--Hb_000003_520 Hb_000002_190--Hb_000005_170 Hb_000002_190--Hb_000009_230 Hb_000002_190--Hb_000011_110 Hb_000002_190--Hb_000012_390 Hb_000002_190--Hb_000018_070 Hb_000002_190--Hb_000003_520 Hb_000002_190--Hb_000005_170 Hb_000002_190--Hb_000009_230 Hb_000002_190--Hb_000011_110 Hb_000002_190--Hb_000012_390 Hb_000002_190--Hb_000018_070 Hb_000002_190--Hb_000003_520 Hb_000002_190--Hb_000005_170 Hb_000002_190--Hb_000009_230 Hb_000002_190--Hb_000011_110 Hb_000002_190--Hb_000012_390 Hb_000002_190--Hb_000018_070 Hb_000002_190--Hb_000003_520 Hb_000002_190--Hb_000005_170 Hb_000002_190--Hb_000009_230 Hb_000002_190--Hb_000011_110 Hb_000002_190--Hb_000012_390 Hb_000002_190--Hb_000018_070 Hb_000002_190--Hb_000003_520 Hb_000002_190--Hb_000005_170 Hb_000002_190--Hb_000009_230 Hb_000002_190--Hb_000011_110 Hb_000002_190--Hb_000012_390 Hb_000002_190--Hb_000018_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 10.1894 0 0.0282223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis