Hb_068804_190

Information

Type -
Description -
Location Contig68804: 128850-130801
Sequence    

Annotation

kegg
ID rcu:RCOM_0231290
description kinase, putative (EC:2.7.11.30)
nr
ID XP_002527230.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9LXA5
description L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1
trembl
ID B9SML1
description Kinase, putative OS=Ricinus communis GN=RCOM_0231290 PE=3 SV=1
Gene Ontology
ID GO:0004674
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54135: 129674-129981
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068804_190 0.0 - - kinase, putative [Ricinus communis]
2 Hb_005532_080 0.0213043569 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
3 Hb_166360_010 0.0316682542 - - hypothetical protein POPTR_0010s12130g [Populus trichocarpa]
4 Hb_011549_040 0.0324199017 - - -
5 Hb_056506_040 0.0391405009 - - -
6 Hb_000111_490 0.0585570976 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010577_020 0.0619701039 - - -
8 Hb_024723_010 0.0660375346 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
9 Hb_000933_030 0.0668367271 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
10 Hb_162450_010 0.0682949368 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
11 Hb_007382_110 0.0699310209 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
12 Hb_004218_270 0.0791965704 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
13 Hb_000057_090 0.0805321635 - - hypothetical protein RCOM_1494490 [Ricinus communis]
14 Hb_049955_010 0.0807372236 - - hypothetical protein EUGRSUZ_B00742 [Eucalyptus grandis]
15 Hb_093084_030 0.0878330561 - - oleosin2 [Plukenetia volubilis]
16 Hb_004079_070 0.0899031247 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
17 Hb_000816_140 0.0903749499 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
18 Hb_000326_120 0.0906552067 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
19 Hb_011689_010 0.0938721757 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
20 Hb_000358_260 0.0976495301 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]

Gene co-expression network

sample Hb_068804_190 Hb_068804_190 Hb_005532_080 Hb_005532_080 Hb_068804_190--Hb_005532_080 Hb_166360_010 Hb_166360_010 Hb_068804_190--Hb_166360_010 Hb_011549_040 Hb_011549_040 Hb_068804_190--Hb_011549_040 Hb_056506_040 Hb_056506_040 Hb_068804_190--Hb_056506_040 Hb_000111_490 Hb_000111_490 Hb_068804_190--Hb_000111_490 Hb_010577_020 Hb_010577_020 Hb_068804_190--Hb_010577_020 Hb_005532_080--Hb_166360_010 Hb_005532_080--Hb_011549_040 Hb_007382_110 Hb_007382_110 Hb_005532_080--Hb_007382_110 Hb_005532_080--Hb_056506_040 Hb_162450_010 Hb_162450_010 Hb_005532_080--Hb_162450_010 Hb_166360_010--Hb_011549_040 Hb_166360_010--Hb_162450_010 Hb_004218_270 Hb_004218_270 Hb_166360_010--Hb_004218_270 Hb_000933_030 Hb_000933_030 Hb_166360_010--Hb_000933_030 Hb_011549_040--Hb_000933_030 Hb_011549_040--Hb_056506_040 Hb_011549_040--Hb_010577_020 Hb_056506_040--Hb_000111_490 Hb_056506_040--Hb_010577_020 Hb_024723_010 Hb_024723_010 Hb_056506_040--Hb_024723_010 Hb_000111_490--Hb_024723_010 Hb_000485_100 Hb_000485_100 Hb_000111_490--Hb_000485_100 Hb_002391_010 Hb_002391_010 Hb_000111_490--Hb_002391_010 Hb_001926_080 Hb_001926_080 Hb_000111_490--Hb_001926_080 Hb_005833_010 Hb_005833_010 Hb_010577_020--Hb_005833_010 Hb_000358_260 Hb_000358_260 Hb_010577_020--Hb_000358_260 Hb_010577_020--Hb_000111_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0584654 0.144129 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0847538

CAGE analysis