Hb_068922_010

Information

Type -
Description -
Location Contig68922: 21-728
Sequence    

Annotation

kegg
ID pop:POPTR_0005s17480g
description POPTRDRAFT_716442; hypothetical protein
nr
ID XP_002306557.2
description hypothetical protein POPTR_0005s17480g [Populus trichocarpa]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID B9H6Y9
description MATE efflux family protein OS=Populus trichocarpa GN=POPTR_0005s17480g PE=3 SV=2
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_068922_010 0.0 - - hypothetical protein POPTR_0005s17480g [Populus trichocarpa]
2 Hb_136765_010 0.1524169906 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
3 Hb_012867_010 0.1880539536 - - Vacuolar protein sorting 45 [Theobroma cacao]
4 Hb_010068_100 0.1972703697 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
5 Hb_012120_030 0.2192707314 - - -
6 Hb_000253_030 0.2237222873 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
7 Hb_005271_020 0.2300682178 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
8 Hb_002141_020 0.2322355982 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
9 Hb_004374_180 0.2376472156 - - GMP synthase, putative [Ricinus communis]
10 Hb_008667_040 0.2390977281 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
11 Hb_024505_020 0.2393333037 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
12 Hb_004712_180 0.2419758018 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007123_060 0.2430765526 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
14 Hb_002228_100 0.2434644522 - - calcineurin-like phosphoesterase [Manihot esculenta]
15 Hb_003371_180 0.2457158994 - - -
16 Hb_000661_160 0.2461328849 - - hexokinase [Manihot esculenta]
17 Hb_000264_290 0.2484754665 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
18 Hb_089889_020 0.2528405515 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
19 Hb_006541_090 0.255931503 - - hypothetical protein VITISV_020777 [Vitis vinifera]
20 Hb_042404_010 0.2563978384 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_068922_010 Hb_068922_010 Hb_136765_010 Hb_136765_010 Hb_068922_010--Hb_136765_010 Hb_012867_010 Hb_012867_010 Hb_068922_010--Hb_012867_010 Hb_010068_100 Hb_010068_100 Hb_068922_010--Hb_010068_100 Hb_012120_030 Hb_012120_030 Hb_068922_010--Hb_012120_030 Hb_000253_030 Hb_000253_030 Hb_068922_010--Hb_000253_030 Hb_005271_020 Hb_005271_020 Hb_068922_010--Hb_005271_020 Hb_000331_500 Hb_000331_500 Hb_136765_010--Hb_000331_500 Hb_002141_020 Hb_002141_020 Hb_136765_010--Hb_002141_020 Hb_136765_010--Hb_012867_010 Hb_136765_010--Hb_010068_100 Hb_004241_040 Hb_004241_040 Hb_136765_010--Hb_004241_040 Hb_012867_010--Hb_002141_020 Hb_089889_020 Hb_089889_020 Hb_012867_010--Hb_089889_020 Hb_107847_010 Hb_107847_010 Hb_012867_010--Hb_107847_010 Hb_125861_010 Hb_125861_010 Hb_012867_010--Hb_125861_010 Hb_010068_100--Hb_000253_030 Hb_006541_090 Hb_006541_090 Hb_010068_100--Hb_006541_090 Hb_082407_010 Hb_082407_010 Hb_010068_100--Hb_082407_010 Hb_008667_040 Hb_008667_040 Hb_010068_100--Hb_008667_040 Hb_000186_190 Hb_000186_190 Hb_012120_030--Hb_000186_190 Hb_007123_060 Hb_007123_060 Hb_012120_030--Hb_007123_060 Hb_000264_290 Hb_000264_290 Hb_012120_030--Hb_000264_290 Hb_000106_130 Hb_000106_130 Hb_012120_030--Hb_000106_130 Hb_000302_130 Hb_000302_130 Hb_012120_030--Hb_000302_130 Hb_064264_010 Hb_064264_010 Hb_012120_030--Hb_064264_010 Hb_163599_010 Hb_163599_010 Hb_000253_030--Hb_163599_010 Hb_000253_030--Hb_136765_010 Hb_155541_010 Hb_155541_010 Hb_000253_030--Hb_155541_010 Hb_003551_010 Hb_003551_010 Hb_000253_030--Hb_003551_010 Hb_000253_030--Hb_008667_040 Hb_002582_070 Hb_002582_070 Hb_005271_020--Hb_002582_070 Hb_051017_010 Hb_051017_010 Hb_005271_020--Hb_051017_010 Hb_002228_100 Hb_002228_100 Hb_005271_020--Hb_002228_100 Hb_002027_020 Hb_002027_020 Hb_005271_020--Hb_002027_020 Hb_024505_020 Hb_024505_020 Hb_005271_020--Hb_024505_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.686436 0.370897 0.988134 1.05793 1.31915 1.58185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.91606 0.797096 0 0 0

CAGE analysis