Hb_069150_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig69150: 821-4983
Sequence    

Annotation

kegg
ID rcu:RCOM_0662960
description Disease resistance protein RPM1, putative (EC:3.1.3.16)
nr
ID XP_002530179.1
description Disease resistance protein RPM1, putative [Ricinus communis]
swissprot
ID O81825
description Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1
trembl
ID B9SW10
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0662960 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54401: 2111-2723 , PASA_asmbl_54402: 2851-3730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069150_010 0.0 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
2 Hb_006478_040 0.119584546 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
3 Hb_002713_010 0.1342987675 - - multidrug resistance protein 1, 2, putative [Ricinus communis]
4 Hb_000072_170 0.1344313607 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
5 Hb_002994_030 0.1358858403 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-like [Pyrus x bretschneideri]
6 Hb_000739_300 0.1384652426 - - PREDICTED: uncharacterized protein LOC105643092 [Jatropha curcas]
7 Hb_000000_230 0.1412124835 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
8 Hb_002641_030 0.1421023666 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
9 Hb_001470_030 0.1424446331 - - PREDICTED: MORC family CW-type zinc finger protein 3 isoform X2 [Jatropha curcas]
10 Hb_003494_230 0.1431399334 - - starch synthase isoform II [Manihot esculenta]
11 Hb_004781_010 0.1432497311 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
12 Hb_000847_060 0.1443239831 - - hypothetical protein [Jatropha curcas]
13 Hb_002193_030 0.144779359 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
14 Hb_050847_050 0.1461542009 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
15 Hb_002205_230 0.1473326753 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
16 Hb_000164_100 0.1511186728 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
17 Hb_002027_350 0.151466119 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
18 Hb_189216_020 0.1521251932 - - PREDICTED: translin [Jatropha curcas]
19 Hb_011618_060 0.1535658817 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
20 Hb_000175_100 0.154037331 - - protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_069150_010 Hb_069150_010 Hb_006478_040 Hb_006478_040 Hb_069150_010--Hb_006478_040 Hb_002713_010 Hb_002713_010 Hb_069150_010--Hb_002713_010 Hb_000072_170 Hb_000072_170 Hb_069150_010--Hb_000072_170 Hb_002994_030 Hb_002994_030 Hb_069150_010--Hb_002994_030 Hb_000739_300 Hb_000739_300 Hb_069150_010--Hb_000739_300 Hb_000000_230 Hb_000000_230 Hb_069150_010--Hb_000000_230 Hb_000340_400 Hb_000340_400 Hb_006478_040--Hb_000340_400 Hb_001546_080 Hb_001546_080 Hb_006478_040--Hb_001546_080 Hb_003030_060 Hb_003030_060 Hb_006478_040--Hb_003030_060 Hb_000318_250 Hb_000318_250 Hb_006478_040--Hb_000318_250 Hb_005116_060 Hb_005116_060 Hb_006478_040--Hb_005116_060 Hb_001470_030 Hb_001470_030 Hb_006478_040--Hb_001470_030 Hb_002713_010--Hb_000739_300 Hb_002534_120 Hb_002534_120 Hb_002713_010--Hb_002534_120 Hb_003529_170 Hb_003529_170 Hb_002713_010--Hb_003529_170 Hb_000009_180 Hb_000009_180 Hb_002713_010--Hb_000009_180 Hb_000920_300 Hb_000920_300 Hb_002713_010--Hb_000920_300 Hb_002126_030 Hb_002126_030 Hb_000072_170--Hb_002126_030 Hb_005276_200 Hb_005276_200 Hb_000072_170--Hb_005276_200 Hb_000085_210 Hb_000085_210 Hb_000072_170--Hb_000085_210 Hb_000749_010 Hb_000749_010 Hb_000072_170--Hb_000749_010 Hb_000699_150 Hb_000699_150 Hb_000072_170--Hb_000699_150 Hb_001439_220 Hb_001439_220 Hb_000072_170--Hb_001439_220 Hb_000078_120 Hb_000078_120 Hb_002994_030--Hb_000078_120 Hb_000948_160 Hb_000948_160 Hb_002994_030--Hb_000948_160 Hb_000696_330 Hb_000696_330 Hb_002994_030--Hb_000696_330 Hb_189216_020 Hb_189216_020 Hb_002994_030--Hb_189216_020 Hb_006831_140 Hb_006831_140 Hb_002994_030--Hb_006831_140 Hb_002994_030--Hb_001470_030 Hb_000419_020 Hb_000419_020 Hb_000739_300--Hb_000419_020 Hb_000136_260 Hb_000136_260 Hb_000739_300--Hb_000136_260 Hb_010423_030 Hb_010423_030 Hb_000739_300--Hb_010423_030 Hb_000739_300--Hb_000948_160 Hb_000099_150 Hb_000099_150 Hb_000739_300--Hb_000099_150 Hb_002271_010 Hb_002271_010 Hb_000739_300--Hb_002271_010 Hb_050847_050 Hb_050847_050 Hb_000000_230--Hb_050847_050 Hb_006588_060 Hb_006588_060 Hb_000000_230--Hb_006588_060 Hb_000521_240 Hb_000521_240 Hb_000000_230--Hb_000521_240 Hb_000000_230--Hb_000699_150 Hb_000490_060 Hb_000490_060 Hb_000000_230--Hb_000490_060 Hb_000086_420 Hb_000086_420 Hb_000000_230--Hb_000086_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.15986 5.44154 3.63161 1.85516 1.85164 3.64371
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21391 7.2836 2.15829 4.98452 4.73995

CAGE analysis