Hb_069512_010

Information

Type -
Description -
Location Contig69512: 1-623
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54561: 2-456
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069512_010 0.0 - - -
2 Hb_002043_100 0.1535389374 - - conserved hypothetical protein [Ricinus communis]
3 Hb_046157_010 0.1610694043 - - PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Jatropha curcas]
4 Hb_126933_020 0.1678884663 - - PREDICTED: uncharacterized protein LOC105638525 [Jatropha curcas]
5 Hb_150651_020 0.1794614921 - - Periplasmic beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_002498_300 0.1822463931 - - BnaC04g50140D [Brassica napus]
7 Hb_004048_030 0.1835888496 - - hypothetical protein B456_009G371200, partial [Gossypium raimondii]
8 Hb_002400_010 0.183871409 - - PREDICTED: putative L-ascorbate peroxidase 6 [Jatropha curcas]
9 Hb_007894_190 0.1852207674 - - PREDICTED: uncharacterized protein LOC105632935 [Jatropha curcas]
10 Hb_004635_070 0.1853671374 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Solanum lycopersicum]
11 Hb_001244_050 0.1868338453 - - PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
12 Hb_001907_080 0.1879143845 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
13 Hb_003055_030 0.1975695369 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
14 Hb_000009_020 0.1999222987 - - ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis]
15 Hb_004208_090 0.202036915 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_007317_170 0.2037338828 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
17 Hb_004705_070 0.2057838704 - - PREDICTED: uncharacterized protein LOC105647312 isoform X1 [Jatropha curcas]
18 Hb_007504_030 0.2117755281 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
19 Hb_001953_100 0.2119457235 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
20 Hb_004117_150 0.2138188266 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]

Gene co-expression network

sample Hb_069512_010 Hb_069512_010 Hb_002043_100 Hb_002043_100 Hb_069512_010--Hb_002043_100 Hb_046157_010 Hb_046157_010 Hb_069512_010--Hb_046157_010 Hb_126933_020 Hb_126933_020 Hb_069512_010--Hb_126933_020 Hb_150651_020 Hb_150651_020 Hb_069512_010--Hb_150651_020 Hb_002498_300 Hb_002498_300 Hb_069512_010--Hb_002498_300 Hb_004048_030 Hb_004048_030 Hb_069512_010--Hb_004048_030 Hb_001907_080 Hb_001907_080 Hb_002043_100--Hb_001907_080 Hb_001421_040 Hb_001421_040 Hb_002043_100--Hb_001421_040 Hb_001377_060 Hb_001377_060 Hb_002043_100--Hb_001377_060 Hb_016687_010 Hb_016687_010 Hb_002043_100--Hb_016687_010 Hb_005488_190 Hb_005488_190 Hb_002043_100--Hb_005488_190 Hb_046157_010--Hb_150651_020 Hb_001001_120 Hb_001001_120 Hb_046157_010--Hb_001001_120 Hb_046157_010--Hb_126933_020 Hb_046157_010--Hb_002043_100 Hb_046157_010--Hb_001907_080 Hb_004855_070 Hb_004855_070 Hb_126933_020--Hb_004855_070 Hb_003416_020 Hb_003416_020 Hb_126933_020--Hb_003416_020 Hb_126933_020--Hb_005488_190 Hb_126933_020--Hb_150651_020 Hb_004208_090 Hb_004208_090 Hb_126933_020--Hb_004208_090 Hb_001365_030 Hb_001365_030 Hb_126933_020--Hb_001365_030 Hb_150651_020--Hb_001001_120 Hb_001597_020 Hb_001597_020 Hb_150651_020--Hb_001597_020 Hb_004705_070 Hb_004705_070 Hb_150651_020--Hb_004705_070 Hb_004635_070 Hb_004635_070 Hb_150651_020--Hb_004635_070 Hb_007894_190 Hb_007894_190 Hb_150651_020--Hb_007894_190 Hb_002498_300--Hb_004705_070 Hb_002498_300--Hb_126933_020 Hb_002498_300--Hb_150651_020 Hb_002498_300--Hb_004208_090 Hb_002400_010 Hb_002400_010 Hb_002498_300--Hb_002400_010 Hb_000093_140 Hb_000093_140 Hb_002498_300--Hb_000093_140 Hb_004048_030--Hb_002043_100 Hb_004048_030--Hb_001421_040 Hb_166230_010 Hb_166230_010 Hb_004048_030--Hb_166230_010 Hb_007504_030 Hb_007504_030 Hb_004048_030--Hb_007504_030 Hb_001231_010 Hb_001231_010 Hb_004048_030--Hb_001231_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101425 0.0955133 0.954812 0.174518 0.0987617 0.226827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.230255 0.882948

CAGE analysis