Hb_069696_020

Information

Type -
Description -
Location Contig69696: 4056-4586
Sequence    

Annotation

kegg
ID tcc:TCM_040033
description ACD1-like
nr
ID XP_012067095.1
description PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
swissprot
ID Q8W496
description Protochlorophyllide-dependent translocon component 52, chloroplastic OS=Arabidopsis thaliana GN=PTC52 PE=2 SV=1
trembl
ID A0A067L4E1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01891 PE=4 SV=1
Gene Ontology
ID GO:0009941
description protochlorophyllide-dependent translocon component chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069696_020 0.0 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X2 [Jatropha curcas]
2 Hb_131876_010 0.0674286731 transcription factor TF Family: MYB PREDICTED: myb-related protein 308-like isoform X1 [Jatropha curcas]
3 Hb_002073_150 0.0706791983 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
4 Hb_000627_050 0.0719710158 - - PREDICTED: uncharacterized protein LOC105632845 [Jatropha curcas]
5 Hb_000984_160 0.0735891057 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
6 Hb_000140_460 0.0757314428 - - PREDICTED: uncharacterized protein LOC105628417 [Jatropha curcas]
7 Hb_030827_010 0.07740674 transcription factor TF Family: HB Homeobox-leucine zipper ROC6 [Gossypium arboreum]
8 Hb_001248_070 0.0781114179 - - PREDICTED: probable polyamine transporter At3g19553 [Jatropha curcas]
9 Hb_012389_010 0.0869257773 - - hypothetical protein POPTR_0018s11820g [Populus trichocarpa]
10 Hb_001051_010 0.088409995 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
11 Hb_000703_120 0.0915493335 - - PREDICTED: uncharacterized protein LOC105635706 isoform X1 [Jatropha curcas]
12 Hb_000212_410 0.0934475073 - - PREDICTED: serine carboxypeptidase 1-like [Jatropha curcas]
13 Hb_000041_210 0.0973646314 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
14 Hb_000705_040 0.0980177094 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000076_060 0.0993609056 - - hypothetical protein RCOM_0586940 [Ricinus communis]
16 Hb_009788_020 0.1011184253 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840 [Jatropha curcas]
17 Hb_000675_010 0.1027749374 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
18 Hb_005569_010 0.1030403997 - - Heme-binding protein, putative [Ricinus communis]
19 Hb_000608_290 0.1041997615 - - thioredoxin f-type, putative [Ricinus communis]
20 Hb_003145_010 0.1057439669 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]

Gene co-expression network

sample Hb_069696_020 Hb_069696_020 Hb_131876_010 Hb_131876_010 Hb_069696_020--Hb_131876_010 Hb_002073_150 Hb_002073_150 Hb_069696_020--Hb_002073_150 Hb_000627_050 Hb_000627_050 Hb_069696_020--Hb_000627_050 Hb_000984_160 Hb_000984_160 Hb_069696_020--Hb_000984_160 Hb_000140_460 Hb_000140_460 Hb_069696_020--Hb_000140_460 Hb_030827_010 Hb_030827_010 Hb_069696_020--Hb_030827_010 Hb_131876_010--Hb_002073_150 Hb_012389_010 Hb_012389_010 Hb_131876_010--Hb_012389_010 Hb_131876_010--Hb_000984_160 Hb_000041_210 Hb_000041_210 Hb_131876_010--Hb_000041_210 Hb_131876_010--Hb_000627_050 Hb_011104_020 Hb_011104_020 Hb_002073_150--Hb_011104_020 Hb_002073_150--Hb_012389_010 Hb_001248_070 Hb_001248_070 Hb_002073_150--Hb_001248_070 Hb_000483_430 Hb_000483_430 Hb_002073_150--Hb_000483_430 Hb_000212_410 Hb_000212_410 Hb_000627_050--Hb_000212_410 Hb_000703_120 Hb_000703_120 Hb_000627_050--Hb_000703_120 Hb_009788_020 Hb_009788_020 Hb_000627_050--Hb_009788_020 Hb_007270_020 Hb_007270_020 Hb_000627_050--Hb_007270_020 Hb_000977_020 Hb_000977_020 Hb_000627_050--Hb_000977_020 Hb_005569_010 Hb_005569_010 Hb_000984_160--Hb_005569_010 Hb_004052_030 Hb_004052_030 Hb_000984_160--Hb_004052_030 Hb_001946_120 Hb_001946_120 Hb_000984_160--Hb_001946_120 Hb_000847_030 Hb_000847_030 Hb_000984_160--Hb_000847_030 Hb_000140_460--Hb_002073_150 Hb_006970_030 Hb_006970_030 Hb_000140_460--Hb_006970_030 Hb_000618_110 Hb_000618_110 Hb_000140_460--Hb_000618_110 Hb_000140_460--Hb_000984_160 Hb_018591_020 Hb_018591_020 Hb_000140_460--Hb_018591_020 Hb_003145_010 Hb_003145_010 Hb_030827_010--Hb_003145_010 Hb_030827_010--Hb_000627_050 Hb_016924_010 Hb_016924_010 Hb_030827_010--Hb_016924_010 Hb_030827_010--Hb_000703_120 Hb_001278_090 Hb_001278_090 Hb_030827_010--Hb_001278_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.229614 6.15425 30.087 23.2965 0.0656993 0.320287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.164369 0.38732 0 7.45167 47.566

CAGE analysis