Hb_069738_010

Information

Type -
Description -
Location Contig69738: 131-1242
Sequence    

Annotation

kegg
ID rcu:RCOM_0603610
description GTP-binding protein alpha subunit, gna, putative
nr
ID XP_012079134.1
description PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
swissprot
ID O80462
description Extra-large guanine nucleotide-binding protein 1 OS=Arabidopsis thaliana GN=XLG1 PE=1 SV=2
trembl
ID A0A067KHW0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12306 PE=4 SV=1
Gene Ontology
ID GO:0003924
description extra-large guanine nucleotide-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069738_010 0.0 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
2 Hb_000192_080 0.0903549322 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
3 Hb_012322_010 0.0929063512 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
4 Hb_000009_560 0.0952981058 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
5 Hb_000185_040 0.0961700074 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
6 Hb_000318_290 0.1014550591 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
7 Hb_010964_040 0.1035714495 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
8 Hb_004767_100 0.1043321391 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
9 Hb_007638_030 0.1045884251 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
10 Hb_003750_050 0.1051176986 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
11 Hb_002675_070 0.1059056828 - - PREDICTED: protein CASC3 [Jatropha curcas]
12 Hb_003777_310 0.1070912959 - - conserved hypothetical protein [Ricinus communis]
13 Hb_144528_010 0.1082245874 - - type II inositol 5-phosphatase, putative [Ricinus communis]
14 Hb_000083_120 0.1086873377 - - transcription factor, putative [Ricinus communis]
15 Hb_005269_040 0.1093065381 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g06270 [Jatropha curcas]
16 Hb_000608_240 0.1097500504 - - eIF4-gamma/eIF5/eIF2-epsilon domain-containing family protein [Populus trichocarpa]
17 Hb_001377_490 0.1102129058 - - PREDICTED: uncharacterized protein LOC105642821 [Jatropha curcas]
18 Hb_044736_010 0.1104830204 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000127_040 0.1108850115 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
20 Hb_005765_010 0.1127867137 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_069738_010 Hb_069738_010 Hb_000192_080 Hb_000192_080 Hb_069738_010--Hb_000192_080 Hb_012322_010 Hb_012322_010 Hb_069738_010--Hb_012322_010 Hb_000009_560 Hb_000009_560 Hb_069738_010--Hb_000009_560 Hb_000185_040 Hb_000185_040 Hb_069738_010--Hb_000185_040 Hb_000318_290 Hb_000318_290 Hb_069738_010--Hb_000318_290 Hb_010964_040 Hb_010964_040 Hb_069738_010--Hb_010964_040 Hb_007638_030 Hb_007638_030 Hb_000192_080--Hb_007638_030 Hb_000192_080--Hb_000009_560 Hb_000192_080--Hb_012322_010 Hb_000665_060 Hb_000665_060 Hb_000192_080--Hb_000665_060 Hb_000208_280 Hb_000208_280 Hb_000192_080--Hb_000208_280 Hb_004567_090 Hb_004567_090 Hb_000192_080--Hb_004567_090 Hb_187953_010 Hb_187953_010 Hb_012322_010--Hb_187953_010 Hb_012322_010--Hb_007638_030 Hb_000212_380 Hb_000212_380 Hb_012322_010--Hb_000212_380 Hb_000429_150 Hb_000429_150 Hb_012322_010--Hb_000429_150 Hb_000140_280 Hb_000140_280 Hb_012322_010--Hb_000140_280 Hb_001377_490 Hb_001377_490 Hb_000009_560--Hb_001377_490 Hb_015934_040 Hb_015934_040 Hb_000009_560--Hb_015934_040 Hb_001538_130 Hb_001538_130 Hb_000009_560--Hb_001538_130 Hb_003168_110 Hb_003168_110 Hb_000009_560--Hb_003168_110 Hb_000083_120 Hb_000083_120 Hb_000009_560--Hb_000083_120 Hb_011485_070 Hb_011485_070 Hb_000185_040--Hb_011485_070 Hb_002740_180 Hb_002740_180 Hb_000185_040--Hb_002740_180 Hb_000185_040--Hb_001377_490 Hb_000185_040--Hb_000318_290 Hb_001341_170 Hb_001341_170 Hb_000185_040--Hb_001341_170 Hb_002435_120 Hb_002435_120 Hb_000185_040--Hb_002435_120 Hb_003777_310 Hb_003777_310 Hb_000318_290--Hb_003777_310 Hb_054865_150 Hb_054865_150 Hb_000318_290--Hb_054865_150 Hb_000608_320 Hb_000608_320 Hb_000318_290--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_004767_100 Hb_004767_100 Hb_000318_290--Hb_004767_100 Hb_010964_040--Hb_007638_030 Hb_010964_040--Hb_004567_090 Hb_001279_150 Hb_001279_150 Hb_010964_040--Hb_001279_150 Hb_000200_020 Hb_000200_020 Hb_010964_040--Hb_000200_020 Hb_003750_050 Hb_003750_050 Hb_010964_040--Hb_003750_050 Hb_002481_080 Hb_002481_080 Hb_010964_040--Hb_002481_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.44917 8.68147 5.2138 14.1672 6.53706 19.5465
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.23729 10.6173 13.5441 10.5909 6.70885

CAGE analysis