Hb_069841_010

Information

Type -
Description -
Location Contig69841: 646-2833
Sequence    

Annotation

kegg
ID mdm:103447172
description putative disease resistance protein At3g14460
nr
ID AAS77675.1
description resistance protein [Quercus suber]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID Q6QT45
description Resistance protein (Fragment) OS=Quercus suber GN=RPc PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54665: 825-1553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_069841_010 0.0 - - resistance protein [Quercus suber]
2 Hb_001196_080 0.1152671439 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
3 Hb_000732_070 0.1477398302 - - PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
4 Hb_000997_150 0.1523035515 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_000988_030 0.1545500278 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000671_060 0.1575165472 - - protein binding protein, putative [Ricinus communis]
7 Hb_001079_030 0.164974479 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
8 Hb_004324_060 0.167288993 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
9 Hb_000991_050 0.1681657903 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
10 Hb_020805_100 0.1689125885 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
11 Hb_000692_120 0.1690236345 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
12 Hb_012038_010 0.170383962 - - phospholipid-transporting atpase, putative [Ricinus communis]
13 Hb_000345_490 0.1704445883 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
14 Hb_003090_150 0.1708743379 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]
15 Hb_002774_150 0.1720444533 - - PREDICTED: F-box protein At1g22220 [Jatropha curcas]
16 Hb_005736_050 0.1732207173 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
17 Hb_010346_020 0.1736111095 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
18 Hb_012305_140 0.1737771792 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
19 Hb_005694_130 0.1761009202 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
20 Hb_005568_130 0.1762145336 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_069841_010 Hb_069841_010 Hb_001196_080 Hb_001196_080 Hb_069841_010--Hb_001196_080 Hb_000732_070 Hb_000732_070 Hb_069841_010--Hb_000732_070 Hb_000997_150 Hb_000997_150 Hb_069841_010--Hb_000997_150 Hb_000988_030 Hb_000988_030 Hb_069841_010--Hb_000988_030 Hb_000671_060 Hb_000671_060 Hb_069841_010--Hb_000671_060 Hb_001079_030 Hb_001079_030 Hb_069841_010--Hb_001079_030 Hb_000692_120 Hb_000692_120 Hb_001196_080--Hb_000692_120 Hb_001196_080--Hb_000671_060 Hb_003090_150 Hb_003090_150 Hb_001196_080--Hb_003090_150 Hb_005054_310 Hb_005054_310 Hb_001196_080--Hb_005054_310 Hb_002311_140 Hb_002311_140 Hb_001196_080--Hb_002311_140 Hb_020805_100 Hb_020805_100 Hb_000732_070--Hb_020805_100 Hb_000086_050 Hb_000086_050 Hb_000732_070--Hb_000086_050 Hb_003895_020 Hb_003895_020 Hb_000732_070--Hb_003895_020 Hb_002400_230 Hb_002400_230 Hb_000732_070--Hb_002400_230 Hb_000334_130 Hb_000334_130 Hb_000732_070--Hb_000334_130 Hb_006573_160 Hb_006573_160 Hb_000732_070--Hb_006573_160 Hb_000997_150--Hb_000732_070 Hb_001454_220 Hb_001454_220 Hb_000997_150--Hb_001454_220 Hb_001269_310 Hb_001269_310 Hb_000997_150--Hb_001269_310 Hb_000997_150--Hb_002400_230 Hb_044155_010 Hb_044155_010 Hb_000997_150--Hb_044155_010 Hb_000185_150 Hb_000185_150 Hb_000997_150--Hb_000185_150 Hb_000988_030--Hb_000185_150 Hb_010346_020 Hb_010346_020 Hb_000988_030--Hb_010346_020 Hb_065379_010 Hb_065379_010 Hb_000988_030--Hb_065379_010 Hb_003638_010 Hb_003638_010 Hb_000988_030--Hb_003638_010 Hb_000988_030--Hb_000732_070 Hb_000345_490 Hb_000345_490 Hb_000988_030--Hb_000345_490 Hb_000671_060--Hb_003090_150 Hb_000163_230 Hb_000163_230 Hb_000671_060--Hb_000163_230 Hb_000671_060--Hb_002311_140 Hb_012305_140 Hb_012305_140 Hb_000671_060--Hb_012305_140 Hb_000261_280 Hb_000261_280 Hb_000671_060--Hb_000261_280 Hb_001409_050 Hb_001409_050 Hb_001079_030--Hb_001409_050 Hb_009193_110 Hb_009193_110 Hb_001079_030--Hb_009193_110 Hb_001079_030--Hb_001196_080 Hb_000139_180 Hb_000139_180 Hb_001079_030--Hb_000139_180 Hb_012038_010 Hb_012038_010 Hb_001079_030--Hb_012038_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.898737 5.82646 3.55947 1.38173 2.85782 1.57572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.617247 0.224151 0.0707541 0.639387 1.61629

CAGE analysis