Hb_070469_010

Information

Type -
Description -
Location Contig70469: 1641-3538
Sequence    

Annotation

kegg
ID pop:POPTR_0002s21850g
description hypothetical protein
nr
ID XP_006386792.1
description hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GR29
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s21850g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070469_010 0.0 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
2 Hb_004935_080 0.0988967837 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
3 Hb_076874_010 0.1308748749 - - PREDICTED: ER lumen protein-retaining receptor [Jatropha curcas]
4 Hb_162040_010 0.1374510332 - - -
5 Hb_126295_010 0.140636503 - - PREDICTED: protein SEH1 [Jatropha curcas]
6 Hb_003925_070 0.144391248 - - ATOZI1, putative [Ricinus communis]
7 Hb_121467_010 0.1493541834 - - tubulin-specific chaperone E, putative [Ricinus communis]
8 Hb_000637_140 0.1502812651 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
9 Hb_000130_190 0.1574016356 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
10 Hb_002320_070 0.1581699958 - - conserved hypothetical protein [Ricinus communis]
11 Hb_086022_010 0.158181189 - - PREDICTED: succinate dehydrogenase assembly factor 1 homolog, mitochondrial [Nicotiana tomentosiformis]
12 Hb_099878_050 0.1589513616 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]
13 Hb_003038_220 0.1603937609 - - eukaryotic translation initiation factor 2 gamma subunit, putative [Ricinus communis]
14 Hb_106411_010 0.1608347103 - - Ribosomal protein S25 family protein [Theobroma cacao]
15 Hb_001623_300 0.1642622099 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
16 Hb_028227_010 0.1653523142 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
17 Hb_002217_380 0.1656237789 - - PREDICTED: uncharacterized protein LOC105643567 [Jatropha curcas]
18 Hb_000429_250 0.1662112879 - - hypothetical protein L484_000744 [Morus notabilis]
19 Hb_010655_020 0.1677074151 - - hypothetical protein CICLE_v10032410mg [Citrus clementina]
20 Hb_051424_010 0.1709908547 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]

Gene co-expression network

sample Hb_070469_010 Hb_070469_010 Hb_004935_080 Hb_004935_080 Hb_070469_010--Hb_004935_080 Hb_076874_010 Hb_076874_010 Hb_070469_010--Hb_076874_010 Hb_162040_010 Hb_162040_010 Hb_070469_010--Hb_162040_010 Hb_126295_010 Hb_126295_010 Hb_070469_010--Hb_126295_010 Hb_003925_070 Hb_003925_070 Hb_070469_010--Hb_003925_070 Hb_121467_010 Hb_121467_010 Hb_070469_010--Hb_121467_010 Hb_002320_070 Hb_002320_070 Hb_004935_080--Hb_002320_070 Hb_000130_190 Hb_000130_190 Hb_004935_080--Hb_000130_190 Hb_003038_220 Hb_003038_220 Hb_004935_080--Hb_003038_220 Hb_013358_100 Hb_013358_100 Hb_004935_080--Hb_013358_100 Hb_009393_200 Hb_009393_200 Hb_004935_080--Hb_009393_200 Hb_000025_050 Hb_000025_050 Hb_076874_010--Hb_000025_050 Hb_076874_010--Hb_003925_070 Hb_106411_010 Hb_106411_010 Hb_076874_010--Hb_106411_010 Hb_000608_110 Hb_000608_110 Hb_076874_010--Hb_000608_110 Hb_002530_010 Hb_002530_010 Hb_076874_010--Hb_002530_010 Hb_086022_010 Hb_086022_010 Hb_076874_010--Hb_086022_010 Hb_007951_040 Hb_007951_040 Hb_162040_010--Hb_007951_040 Hb_001025_110 Hb_001025_110 Hb_162040_010--Hb_001025_110 Hb_001454_380 Hb_001454_380 Hb_162040_010--Hb_001454_380 Hb_000959_250 Hb_000959_250 Hb_162040_010--Hb_000959_250 Hb_003050_370 Hb_003050_370 Hb_162040_010--Hb_003050_370 Hb_012023_020 Hb_012023_020 Hb_126295_010--Hb_012023_020 Hb_002067_120 Hb_002067_120 Hb_126295_010--Hb_002067_120 Hb_019053_020 Hb_019053_020 Hb_126295_010--Hb_019053_020 Hb_003549_090 Hb_003549_090 Hb_126295_010--Hb_003549_090 Hb_001541_090 Hb_001541_090 Hb_126295_010--Hb_001541_090 Hb_126295_010--Hb_000025_050 Hb_003925_070--Hb_000025_050 Hb_003925_070--Hb_106411_010 Hb_004466_040 Hb_004466_040 Hb_003925_070--Hb_004466_040 Hb_003925_070--Hb_086022_010 Hb_088428_010 Hb_088428_010 Hb_121467_010--Hb_088428_010 Hb_000159_110 Hb_000159_110 Hb_121467_010--Hb_000159_110 Hb_009119_030 Hb_009119_030 Hb_121467_010--Hb_009119_030 Hb_002411_130 Hb_002411_130 Hb_121467_010--Hb_002411_130 Hb_001767_120 Hb_001767_120 Hb_121467_010--Hb_001767_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.2844 68.8514 129.414 183.181 92.5122 243.401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.2554 40.824 22.0675 41.2636 24.926

CAGE analysis