Hb_070498_010

Information

Type -
Description -
Location Contig70498: 146-4753
Sequence    

Annotation

kegg
ID rcu:RCOM_1686340
description receptor kinase, putative (EC:1.3.1.74)
nr
ID XP_002509777.1
description receptor kinase, putative [Ricinus communis]
swissprot
ID C0LGH8
description Probable LRR receptor-like serine/threonine-protein kinase At1g63430 OS=Arabidopsis thaliana GN=At1g63430 PE=2 SV=1
trembl
ID B9RC93
description Receptor kinase, putative OS=Ricinus communis GN=RCOM_1686340 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at1g63430

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55056: 1872-2174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070498_010 0.0 - - receptor kinase, putative [Ricinus communis]
2 Hb_128196_010 0.0712038394 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002301_400 0.074651697 - - structural constituent of cell wall, putative [Ricinus communis]
4 Hb_000996_030 0.0805168994 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g63430 isoform X1 [Jatropha curcas]
5 Hb_012404_020 0.0808723966 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011918_070 0.0845543113 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
7 Hb_000003_750 0.0869016205 - - PREDICTED: lysM domain receptor-like kinase 3 [Jatropha curcas]
8 Hb_001195_550 0.08990064 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
9 Hb_008686_010 0.0913322999 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001157_050 0.0941001267 - - cation efflux protein/ zinc transporter, putative [Ricinus communis]
11 Hb_169893_010 0.0941187946 - - PREDICTED: uncharacterized protein LOC105644112 [Jatropha curcas]
12 Hb_015048_020 0.0993170096 - - PREDICTED: myb-like protein D [Jatropha curcas]
13 Hb_003750_120 0.1003900531 - - PREDICTED: uncharacterized protein LOC105112992 [Populus euphratica]
14 Hb_001221_060 0.1048838827 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
15 Hb_001159_090 0.1059719068 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
16 Hb_168918_010 0.106501138 - - pectin acetylesterase, putative [Ricinus communis]
17 Hb_005568_020 0.1082059858 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
18 Hb_000032_420 0.1087923521 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
19 Hb_005496_040 0.110112915 - - PREDICTED: uncharacterized protein LOC105630864 [Jatropha curcas]
20 Hb_000120_340 0.1124191083 - - Cucumisin precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_070498_010 Hb_070498_010 Hb_128196_010 Hb_128196_010 Hb_070498_010--Hb_128196_010 Hb_002301_400 Hb_002301_400 Hb_070498_010--Hb_002301_400 Hb_000996_030 Hb_000996_030 Hb_070498_010--Hb_000996_030 Hb_012404_020 Hb_012404_020 Hb_070498_010--Hb_012404_020 Hb_011918_070 Hb_011918_070 Hb_070498_010--Hb_011918_070 Hb_000003_750 Hb_000003_750 Hb_070498_010--Hb_000003_750 Hb_128196_010--Hb_002301_400 Hb_001157_050 Hb_001157_050 Hb_128196_010--Hb_001157_050 Hb_128196_010--Hb_012404_020 Hb_001221_060 Hb_001221_060 Hb_128196_010--Hb_001221_060 Hb_005568_020 Hb_005568_020 Hb_128196_010--Hb_005568_020 Hb_002301_400--Hb_012404_020 Hb_001159_090 Hb_001159_090 Hb_002301_400--Hb_001159_090 Hb_006196_030 Hb_006196_030 Hb_002301_400--Hb_006196_030 Hb_001195_550 Hb_001195_550 Hb_002301_400--Hb_001195_550 Hb_000996_030--Hb_011918_070 Hb_003580_050 Hb_003580_050 Hb_000996_030--Hb_003580_050 Hb_168918_010 Hb_168918_010 Hb_000996_030--Hb_168918_010 Hb_000977_030 Hb_000977_030 Hb_000996_030--Hb_000977_030 Hb_004696_010 Hb_004696_010 Hb_000996_030--Hb_004696_010 Hb_005730_110 Hb_005730_110 Hb_012404_020--Hb_005730_110 Hb_001366_290 Hb_001366_290 Hb_012404_020--Hb_001366_290 Hb_028008_040 Hb_028008_040 Hb_012404_020--Hb_028008_040 Hb_011918_070--Hb_000003_750 Hb_005542_120 Hb_005542_120 Hb_011918_070--Hb_005542_120 Hb_000878_050 Hb_000878_050 Hb_011918_070--Hb_000878_050 Hb_011918_070--Hb_004696_010 Hb_000735_020 Hb_000735_020 Hb_011918_070--Hb_000735_020 Hb_000003_750--Hb_001157_050 Hb_003750_120 Hb_003750_120 Hb_000003_750--Hb_003750_120 Hb_005496_040 Hb_005496_040 Hb_000003_750--Hb_005496_040 Hb_015048_020 Hb_015048_020 Hb_000003_750--Hb_015048_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0875447 1.34069 7.77476 8.28212 0.126161 0.21957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0242641 0.0190912 0 1.17804 3.8253

CAGE analysis