Hb_070624_010

Information

Type -
Description -
Location Contig70624: 5-5082
Sequence    

Annotation

kegg
ID rcu:RCOM_1454090
description Reticulocalbin-2 precursor, putative
nr
ID XP_012068579.1
description PREDICTED: reticulocalbin-2 [Jatropha curcas]
swissprot
ID J3S9D9
description Reticulocalbin-2 OS=Crotalus adamanteus PE=1 SV=1
trembl
ID A0A067KWD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24476 PE=4 SV=1
Gene Ontology
ID GO:0005783
description calcium-binding ef hand family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55120: 2834-5087
cDNA
(Sanger)
(ID:Location)		 013_B21.ab1: 3019-5090 , 034_N18.ab1: 2834-5087

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070624_010 0.0 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
2 Hb_000926_060 0.0639389755 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000358_210 0.0726131599 - - oligosaccharyl transferase, putative [Ricinus communis]
4 Hb_003680_220 0.0743131332 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
5 Hb_000645_180 0.0786866769 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase Lipoamide dehydrogenase 1 isoform 1 [Theobroma cacao]
6 Hb_000265_070 0.0859625842 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]
7 Hb_029695_070 0.0908418308 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
8 Hb_001279_090 0.0931831135 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
9 Hb_000300_560 0.0935389744 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
10 Hb_002627_040 0.0937126116 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
11 Hb_000029_400 0.0938050229 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
12 Hb_009296_020 0.0950395206 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
13 Hb_005665_090 0.0957001026 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
14 Hb_008725_270 0.0986610794 - - PREDICTED: probable protein disulfide-isomerase A6 [Jatropha curcas]
15 Hb_001434_020 0.1017366313 - - hypothetical protein RCOM_0841800 [Ricinus communis]
16 Hb_101334_020 0.1018778884 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
17 Hb_001623_490 0.1048263064 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
18 Hb_021596_020 0.1056369643 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
19 Hb_002828_060 0.1060654554 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
20 Hb_068079_010 0.1063137757 - - -

Gene co-expression network

sample Hb_070624_010 Hb_070624_010 Hb_000926_060 Hb_000926_060 Hb_070624_010--Hb_000926_060 Hb_000358_210 Hb_000358_210 Hb_070624_010--Hb_000358_210 Hb_003680_220 Hb_003680_220 Hb_070624_010--Hb_003680_220 Hb_000645_180 Hb_000645_180 Hb_070624_010--Hb_000645_180 Hb_000265_070 Hb_000265_070 Hb_070624_010--Hb_000265_070 Hb_029695_070 Hb_029695_070 Hb_070624_010--Hb_029695_070 Hb_000579_080 Hb_000579_080 Hb_000926_060--Hb_000579_080 Hb_000926_060--Hb_003680_220 Hb_000500_220 Hb_000500_220 Hb_000926_060--Hb_000500_220 Hb_008725_270 Hb_008725_270 Hb_000926_060--Hb_008725_270 Hb_000926_060--Hb_000358_210 Hb_000358_210--Hb_000265_070 Hb_002392_020 Hb_002392_020 Hb_000358_210--Hb_002392_020 Hb_003490_060 Hb_003490_060 Hb_000358_210--Hb_003490_060 Hb_002284_100 Hb_002284_100 Hb_000358_210--Hb_002284_100 Hb_003680_220--Hb_008725_270 Hb_002687_200 Hb_002687_200 Hb_003680_220--Hb_002687_200 Hb_003680_220--Hb_000500_220 Hb_009296_020 Hb_009296_020 Hb_003680_220--Hb_009296_020 Hb_000007_090 Hb_000007_090 Hb_003680_220--Hb_000007_090 Hb_068079_010 Hb_068079_010 Hb_000645_180--Hb_068079_010 Hb_022693_130 Hb_022693_130 Hb_000645_180--Hb_022693_130 Hb_012779_080 Hb_012779_080 Hb_000645_180--Hb_012779_080 Hb_000108_020 Hb_000108_020 Hb_000645_180--Hb_000108_020 Hb_000320_190 Hb_000320_190 Hb_000645_180--Hb_000320_190 Hb_009524_030 Hb_009524_030 Hb_000265_070--Hb_009524_030 Hb_000265_070--Hb_002392_020 Hb_007943_150 Hb_007943_150 Hb_000265_070--Hb_007943_150 Hb_000265_070--Hb_000645_180 Hb_002044_020 Hb_002044_020 Hb_029695_070--Hb_002044_020 Hb_029695_070--Hb_000265_070 Hb_029695_070--Hb_000645_180 Hb_003160_070 Hb_003160_070 Hb_029695_070--Hb_003160_070 Hb_005665_090 Hb_005665_090 Hb_029695_070--Hb_005665_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.10766 4.74368 21.0628 12.7324 4.58065 4.19016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.16257 3.09609 2.63778 10.2551 14.7955

CAGE analysis