Hb_070739_010

Information

Type -
Description -
Location Contig70739: 46-2115
Sequence    

Annotation

kegg
ID rcu:RCOM_1498780
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_012090385.1
description PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
swissprot
ID Q8GYY0
description Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2
trembl
ID A0A067JHV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26209 PE=3 SV=1
Gene Ontology
ID GO:0016740
description 1-amino-cyclopropane-1-carboxylate synthase 12 isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55153: 1266-1515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070739_010 0.0 - - PREDICTED: probable aminotransferase ACS12 isoform X2 [Jatropha curcas]
2 Hb_000462_140 0.063671635 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
3 Hb_000808_040 0.0670114393 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
4 Hb_086639_070 0.0766004655 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
5 Hb_007919_060 0.0770676783 - - PREDICTED: UPF0047 protein C4A8.02c [Jatropha curcas]
6 Hb_002495_040 0.0803442 - - PREDICTED: chaperone protein dnaJ 6 isoform X1 [Jatropha curcas]
7 Hb_000092_100 0.0824851266 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
8 Hb_001158_220 0.0873054307 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
9 Hb_000661_250 0.0877846703 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
10 Hb_005618_160 0.0917427055 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
11 Hb_005690_010 0.0919332001 - - PREDICTED: origin recognition complex subunit 2 [Populus euphratica]
12 Hb_000189_340 0.091984287 - - PREDICTED: 40S ribosomal protein S3a-1 [Jatropha curcas]
13 Hb_012799_110 0.093097386 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
14 Hb_000465_430 0.0937237861 - - PREDICTED: uncharacterized protein LOC105632325 [Jatropha curcas]
15 Hb_002475_160 0.094387017 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
16 Hb_001380_020 0.0947892612 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
17 Hb_011942_080 0.0948440477 - - PREDICTED: ubiquitin receptor RAD23b-like [Gossypium raimondii]
18 Hb_007643_050 0.0958581893 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_031939_010 0.096151362 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
20 Hb_015978_060 0.096198931 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_070739_010 Hb_070739_010 Hb_000462_140 Hb_000462_140 Hb_070739_010--Hb_000462_140 Hb_000808_040 Hb_000808_040 Hb_070739_010--Hb_000808_040 Hb_086639_070 Hb_086639_070 Hb_070739_010--Hb_086639_070 Hb_007919_060 Hb_007919_060 Hb_070739_010--Hb_007919_060 Hb_002495_040 Hb_002495_040 Hb_070739_010--Hb_002495_040 Hb_000092_100 Hb_000092_100 Hb_070739_010--Hb_000092_100 Hb_000661_250 Hb_000661_250 Hb_000462_140--Hb_000661_250 Hb_001259_090 Hb_001259_090 Hb_000462_140--Hb_001259_090 Hb_005618_160 Hb_005618_160 Hb_000462_140--Hb_005618_160 Hb_003010_030 Hb_003010_030 Hb_000462_140--Hb_003010_030 Hb_022250_030 Hb_022250_030 Hb_000462_140--Hb_022250_030 Hb_015941_030 Hb_015941_030 Hb_000808_040--Hb_015941_030 Hb_000808_040--Hb_086639_070 Hb_008406_160 Hb_008406_160 Hb_000808_040--Hb_008406_160 Hb_000465_430 Hb_000465_430 Hb_000808_040--Hb_000465_430 Hb_003994_180 Hb_003994_180 Hb_000808_040--Hb_003994_180 Hb_086639_070--Hb_000661_250 Hb_000000_160 Hb_000000_160 Hb_086639_070--Hb_000000_160 Hb_086639_070--Hb_001259_090 Hb_086639_070--Hb_007919_060 Hb_007919_060--Hb_022250_030 Hb_001635_170 Hb_001635_170 Hb_007919_060--Hb_001635_170 Hb_000699_130 Hb_000699_130 Hb_007919_060--Hb_000699_130 Hb_007919_060--Hb_000000_160 Hb_002495_040--Hb_000465_430 Hb_003030_070 Hb_003030_070 Hb_002495_040--Hb_003030_070 Hb_001369_180 Hb_001369_180 Hb_002495_040--Hb_001369_180 Hb_012092_010 Hb_012092_010 Hb_002495_040--Hb_012092_010 Hb_002495_040--Hb_000092_100 Hb_001936_080 Hb_001936_080 Hb_002495_040--Hb_001936_080 Hb_000092_100--Hb_000465_430 Hb_000092_100--Hb_001635_170 Hb_000092_100--Hb_001936_080 Hb_096563_010 Hb_096563_010 Hb_000092_100--Hb_096563_010 Hb_000092_100--Hb_003030_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.658218 0.421189 0.319235 0.27408 0.72325 0.883419
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.859007 0.725857 0.23498 0.239833 0.20931

CAGE analysis