Hb_070745_010

Information

Type -
Description -
Location Contig70745: 2151-2960
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13360g
description POPTRDRAFT_876512; hypothetical protein
nr
ID XP_011004631.1
description PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
swissprot
ID Q01389
description Serine/threonine-protein kinase BCK1/SLK1/SSP31 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BCK1 PE=1 SV=1
trembl
ID B9HR94
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13360g PE=4 SV=2
Gene Ontology
ID GO:0016772
description mitogen-activated protein kinase kinase kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_070745_010 0.0 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
2 Hb_007333_020 0.0444613867 - - -
3 Hb_006816_510 0.2397877308 - - Pectinesterase inhibitor, putative [Ricinus communis]
4 Hb_000171_040 0.2435012173 - - -
5 Hb_000146_060 0.2678037256 - - -
6 Hb_008064_010 0.2720666585 - - PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]
7 Hb_136850_040 0.2847967811 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_003405_040 0.2900153747 - - PREDICTED: uncharacterized protein LOC105121978 [Populus euphratica]
9 Hb_000225_050 0.3052988271 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
10 Hb_143863_010 0.310243488 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
11 Hb_020570_010 0.3112798767 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
12 Hb_003362_060 0.3252690158 - - -
13 Hb_003228_070 0.3307625118 - - conserved hypothetical protein [Ricinus communis]
14 Hb_113823_010 0.3330323805 - - -
15 Hb_000488_020 0.3388042037 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
16 Hb_131949_010 0.3394676469 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
17 Hb_000684_340 0.3397003492 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
18 Hb_000173_200 0.3404143572 - - conserved hypothetical protein [Ricinus communis]
19 Hb_184798_040 0.347490621 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
20 Hb_009302_010 0.3502561248 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]

Gene co-expression network

sample Hb_070745_010 Hb_070745_010 Hb_007333_020 Hb_007333_020 Hb_070745_010--Hb_007333_020 Hb_006816_510 Hb_006816_510 Hb_070745_010--Hb_006816_510 Hb_000171_040 Hb_000171_040 Hb_070745_010--Hb_000171_040 Hb_000146_060 Hb_000146_060 Hb_070745_010--Hb_000146_060 Hb_008064_010 Hb_008064_010 Hb_070745_010--Hb_008064_010 Hb_136850_040 Hb_136850_040 Hb_070745_010--Hb_136850_040 Hb_007333_020--Hb_006816_510 Hb_007333_020--Hb_000171_040 Hb_007333_020--Hb_008064_010 Hb_007333_020--Hb_136850_040 Hb_007333_020--Hb_000146_060 Hb_006816_510--Hb_000171_040 Hb_006816_510--Hb_008064_010 Hb_002641_100 Hb_002641_100 Hb_006816_510--Hb_002641_100 Hb_023024_010 Hb_023024_010 Hb_006816_510--Hb_023024_010 Hb_003362_060 Hb_003362_060 Hb_000171_040--Hb_003362_060 Hb_131949_010 Hb_131949_010 Hb_000171_040--Hb_131949_010 Hb_184798_040 Hb_184798_040 Hb_000171_040--Hb_184798_040 Hb_084426_010 Hb_084426_010 Hb_000171_040--Hb_084426_010 Hb_005975_020 Hb_005975_020 Hb_000171_040--Hb_005975_020 Hb_004330_030 Hb_004330_030 Hb_000146_060--Hb_004330_030 Hb_004939_020 Hb_004939_020 Hb_000146_060--Hb_004939_020 Hb_012107_070 Hb_012107_070 Hb_000146_060--Hb_012107_070 Hb_000146_060--Hb_003362_060 Hb_001214_170 Hb_001214_170 Hb_000146_060--Hb_001214_170 Hb_113823_010 Hb_113823_010 Hb_000146_060--Hb_113823_010 Hb_000684_340 Hb_000684_340 Hb_008064_010--Hb_000684_340 Hb_033623_010 Hb_033623_010 Hb_008064_010--Hb_033623_010 Hb_154471_010 Hb_154471_010 Hb_008064_010--Hb_154471_010 Hb_143863_010 Hb_143863_010 Hb_008064_010--Hb_143863_010 Hb_001565_120 Hb_001565_120 Hb_008064_010--Hb_001565_120 Hb_003228_070 Hb_003228_070 Hb_136850_040--Hb_003228_070 Hb_000173_200 Hb_000173_200 Hb_136850_040--Hb_000173_200 Hb_000184_080 Hb_000184_080 Hb_136850_040--Hb_000184_080 Hb_003939_020 Hb_003939_020 Hb_136850_040--Hb_003939_020 Hb_009773_040 Hb_009773_040 Hb_136850_040--Hb_009773_040 Hb_000336_300 Hb_000336_300 Hb_136850_040--Hb_000336_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.045091 0.169106 0.0286983 0 0.0694506 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis