Hb_071079_030

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig71079: 29424-30077
Sequence    

Annotation

kegg
ID cic:CICLE_v10024111mg
description hypothetical protein
nr
ID XP_011001911.1
description PREDICTED: transcription factor TRY-like [Populus euphratica]
swissprot
ID Q8GV05
description Transcription factor TRY OS=Arabidopsis thaliana GN=TRY PE=1 SV=1
trembl
ID A0A067H333
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034546mg PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor try-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071079_030 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor TRY-like [Populus euphratica]
2 Hb_001031_070 0.0003879436 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase CES101 [Jatropha curcas]
3 Hb_000441_240 0.0005797943 - - hypothetical protein ZEAMMB73_005804 [Zea mays]
4 Hb_003687_050 0.0011239049 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000938_010 0.0012517479 - - polyprotein [Oryza australiensis]
6 Hb_002596_100 0.0012620788 - - -
7 Hb_001031_100 0.0023152309 - - -
8 Hb_000724_010 0.0028309701 - - PREDICTED: uncharacterized protein LOC105134348 [Populus euphratica]
9 Hb_080359_020 0.0035351113 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
10 Hb_027556_050 0.0036996873 - - hypothetical protein PHAVU_001G166100g [Phaseolus vulgaris]
11 Hb_159542_010 0.0037714504 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
12 Hb_000345_090 0.0042008382 - - Cell cycle checkpoint control protein family isoform 5 [Theobroma cacao]
13 Hb_000696_180 0.0052211987 - - cysteine protease, putative [Ricinus communis]
14 Hb_000705_320 0.0068903353 - - Transcriptional regulator SUPERMAN, putative [Ricinus communis]
15 Hb_011444_050 0.0082231441 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
16 Hb_000329_240 0.0087380829 transcription factor TF Family: PLATZ zinc ion binding protein, putative [Ricinus communis]
17 Hb_073174_010 0.0089755345 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
18 Hb_163720_010 0.0097065927 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
19 Hb_005625_030 0.0099452142 - - ribosomal protein S12 (mitochondrion) [Chrysobalanus icaco]
20 Hb_070810_010 0.0101143092 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]

Gene co-expression network

sample Hb_071079_030 Hb_071079_030 Hb_001031_070 Hb_001031_070 Hb_071079_030--Hb_001031_070 Hb_000441_240 Hb_000441_240 Hb_071079_030--Hb_000441_240 Hb_003687_050 Hb_003687_050 Hb_071079_030--Hb_003687_050 Hb_000938_010 Hb_000938_010 Hb_071079_030--Hb_000938_010 Hb_002596_100 Hb_002596_100 Hb_071079_030--Hb_002596_100 Hb_001031_100 Hb_001031_100 Hb_071079_030--Hb_001031_100 Hb_001031_070--Hb_000441_240 Hb_001031_070--Hb_003687_050 Hb_001031_070--Hb_002596_100 Hb_001031_070--Hb_000938_010 Hb_001031_070--Hb_001031_100 Hb_000441_240--Hb_003687_050 Hb_000441_240--Hb_002596_100 Hb_000441_240--Hb_001031_100 Hb_000441_240--Hb_000938_010 Hb_003687_050--Hb_002596_100 Hb_003687_050--Hb_001031_100 Hb_000724_010 Hb_000724_010 Hb_003687_050--Hb_000724_010 Hb_000938_010--Hb_003687_050 Hb_000938_010--Hb_002596_100 Hb_159542_010 Hb_159542_010 Hb_000938_010--Hb_159542_010 Hb_002596_100--Hb_001031_100 Hb_002596_100--Hb_000724_010 Hb_001031_100--Hb_000724_010 Hb_080359_020 Hb_080359_020 Hb_001031_100--Hb_080359_020 Hb_027556_050 Hb_027556_050 Hb_001031_100--Hb_027556_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.33153 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.28229 0

CAGE analysis