Hb_071130_030

Information

Type -
Description -
Location Contig71130: 63464-66902
Sequence    

Annotation

kegg
ID rcu:RCOM_0522480
description Pre-mRNA-splicing factor cwc23, putative
nr
ID XP_012071063.1
description PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
swissprot
ID Q5R5L3
description DnaJ homolog subfamily C member 10 OS=Pongo abelii GN=DNAJC10 PE=2 SV=1
trembl
ID A0A067L490
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01067 PE=4 SV=1
Gene Ontology
ID GO:0000166
description dnaj homolog subfamily c member 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071130_030 0.0 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
2 Hb_000676_290 0.0847123017 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
3 Hb_005398_030 0.0867714202 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
4 Hb_117134_010 0.0922936726 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
5 Hb_000963_190 0.0932727892 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
6 Hb_001235_070 0.0964139532 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002685_190 0.0967850648 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
8 Hb_000300_610 0.0999054856 - - cytosolic copper/zinc superoxide dismutase [Hevea brasiliensis]
9 Hb_001278_110 0.1001916407 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
10 Hb_143629_230 0.1007308512 - - ring finger, putative [Ricinus communis]
11 Hb_000340_140 0.1019594193 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
12 Hb_001117_090 0.1021439931 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
13 Hb_100777_010 0.1028814321 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
14 Hb_012338_010 0.1029216045 - - conserved hypothetical protein [Ricinus communis]
15 Hb_024714_010 0.1046277136 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
16 Hb_000317_340 0.1054808692 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005432_030 0.1073237689 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
18 Hb_001009_300 0.1083496783 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
19 Hb_000087_020 0.1104477062 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
20 Hb_000170_010 0.1113029974 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_071130_030 Hb_071130_030 Hb_000676_290 Hb_000676_290 Hb_071130_030--Hb_000676_290 Hb_005398_030 Hb_005398_030 Hb_071130_030--Hb_005398_030 Hb_117134_010 Hb_117134_010 Hb_071130_030--Hb_117134_010 Hb_000963_190 Hb_000963_190 Hb_071130_030--Hb_000963_190 Hb_001235_070 Hb_001235_070 Hb_071130_030--Hb_001235_070 Hb_002685_190 Hb_002685_190 Hb_071130_030--Hb_002685_190 Hb_000024_080 Hb_000024_080 Hb_000676_290--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_000676_290--Hb_000087_020 Hb_000676_290--Hb_005398_030 Hb_010180_020 Hb_010180_020 Hb_000676_290--Hb_010180_020 Hb_002112_040 Hb_002112_040 Hb_000676_290--Hb_002112_040 Hb_005398_030--Hb_000087_020 Hb_005398_030--Hb_000024_080 Hb_005398_030--Hb_117134_010 Hb_011310_190 Hb_011310_190 Hb_005398_030--Hb_011310_190 Hb_005398_030--Hb_001235_070 Hb_000496_060 Hb_000496_060 Hb_117134_010--Hb_000496_060 Hb_000061_320 Hb_000061_320 Hb_117134_010--Hb_000061_320 Hb_001833_110 Hb_001833_110 Hb_117134_010--Hb_001833_110 Hb_005432_030 Hb_005432_030 Hb_117134_010--Hb_005432_030 Hb_007101_100 Hb_007101_100 Hb_000963_190--Hb_007101_100 Hb_000963_190--Hb_000676_290 Hb_000963_190--Hb_001235_070 Hb_007193_100 Hb_007193_100 Hb_000963_190--Hb_007193_100 Hb_001454_140 Hb_001454_140 Hb_000963_190--Hb_001454_140 Hb_005686_110 Hb_005686_110 Hb_001235_070--Hb_005686_110 Hb_001369_050 Hb_001369_050 Hb_001235_070--Hb_001369_050 Hb_000371_080 Hb_000371_080 Hb_001235_070--Hb_000371_080 Hb_148209_120 Hb_148209_120 Hb_001235_070--Hb_148209_120 Hb_004595_020 Hb_004595_020 Hb_001235_070--Hb_004595_020 Hb_003599_040 Hb_003599_040 Hb_002685_190--Hb_003599_040 Hb_004204_120 Hb_004204_120 Hb_002685_190--Hb_004204_120 Hb_002963_010 Hb_002963_010 Hb_002685_190--Hb_002963_010 Hb_000465_060 Hb_000465_060 Hb_002685_190--Hb_000465_060 Hb_009954_040 Hb_009954_040 Hb_002685_190--Hb_009954_040 Hb_001278_110 Hb_001278_110 Hb_002685_190--Hb_001278_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.18372 0.524122 0.503581 0.63421 1.22528 2.82535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.53871 2.71207 1.47772 0.737823 1.09122

CAGE analysis