Hb_071160_010

Information

Type -
Description -
Location Contig71160: 2-4766
Sequence    

Annotation

kegg
ID pop:POPTR_0019s05300g
description putative disease resistance gene NBS-LRR family protein
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9NCL4
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0019s05300g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55318: 376-2295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071160_010 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_001485_010 0.1624481496 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_000233_100 0.1691394319 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
4 Hb_001091_020 0.1813418915 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
5 Hb_010261_030 0.1831151068 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_007709_010 0.1848483481 - - -
7 Hb_002218_070 0.1873472095 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
8 Hb_117840_010 0.1957177898 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_002739_060 0.1976688493 - - -
10 Hb_000086_370 0.2021471224 - - Long-chain-alcohol oxidase FAO2 [Triticum urartu]
11 Hb_000808_220 0.2043193863 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump 1-like [Jatropha curcas]
12 Hb_057079_020 0.204574112 - - conserved hypothetical protein [Ricinus communis]
13 Hb_006738_060 0.2079448847 - - ATP binding protein, putative [Ricinus communis]
14 Hb_007618_010 0.2085699504 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
15 Hb_022108_010 0.2150659417 - - G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Glycine soja]
16 Hb_002232_050 0.215110766 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
17 Hb_000603_120 0.2171056677 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
18 Hb_001611_010 0.2180720966 - - scab resistance family protein [Populus trichocarpa]
19 Hb_000383_020 0.2197253782 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
20 Hb_002835_060 0.2205789506 - - PREDICTED: uncharacterized protein LOC105640295 [Jatropha curcas]

Gene co-expression network

sample Hb_071160_010 Hb_071160_010 Hb_001485_010 Hb_001485_010 Hb_071160_010--Hb_001485_010 Hb_000233_100 Hb_000233_100 Hb_071160_010--Hb_000233_100 Hb_001091_020 Hb_001091_020 Hb_071160_010--Hb_001091_020 Hb_010261_030 Hb_010261_030 Hb_071160_010--Hb_010261_030 Hb_007709_010 Hb_007709_010 Hb_071160_010--Hb_007709_010 Hb_002218_070 Hb_002218_070 Hb_071160_010--Hb_002218_070 Hb_102011_010 Hb_102011_010 Hb_001485_010--Hb_102011_010 Hb_053125_010 Hb_053125_010 Hb_001485_010--Hb_053125_010 Hb_136880_010 Hb_136880_010 Hb_001485_010--Hb_136880_010 Hb_001485_010--Hb_000233_100 Hb_065500_010 Hb_065500_010 Hb_001485_010--Hb_065500_010 Hb_060909_010 Hb_060909_010 Hb_000233_100--Hb_060909_010 Hb_001408_150 Hb_001408_150 Hb_000233_100--Hb_001408_150 Hb_036568_010 Hb_036568_010 Hb_000233_100--Hb_036568_010 Hb_057079_020 Hb_057079_020 Hb_000233_100--Hb_057079_020 Hb_002475_130 Hb_002475_130 Hb_000233_100--Hb_002475_130 Hb_001410_010 Hb_001410_010 Hb_000233_100--Hb_001410_010 Hb_117168_010 Hb_117168_010 Hb_001091_020--Hb_117168_010 Hb_000313_370 Hb_000313_370 Hb_001091_020--Hb_000313_370 Hb_005880_010 Hb_005880_010 Hb_001091_020--Hb_005880_010 Hb_000141_010 Hb_000141_010 Hb_001091_020--Hb_000141_010 Hb_001091_020--Hb_002218_070 Hb_002660_040 Hb_002660_040 Hb_001091_020--Hb_002660_040 Hb_117840_010 Hb_117840_010 Hb_010261_030--Hb_117840_010 Hb_002609_130 Hb_002609_130 Hb_010261_030--Hb_002609_130 Hb_062229_010 Hb_062229_010 Hb_010261_030--Hb_062229_010 Hb_005155_010 Hb_005155_010 Hb_010261_030--Hb_005155_010 Hb_010261_030--Hb_002218_070 Hb_001971_020 Hb_001971_020 Hb_010261_030--Hb_001971_020 Hb_011174_100 Hb_011174_100 Hb_007709_010--Hb_011174_100 Hb_000684_010 Hb_000684_010 Hb_007709_010--Hb_000684_010 Hb_000343_260 Hb_000343_260 Hb_007709_010--Hb_000343_260 Hb_005542_110 Hb_005542_110 Hb_007709_010--Hb_005542_110 Hb_000086_370 Hb_000086_370 Hb_007709_010--Hb_000086_370 Hb_000876_050 Hb_000876_050 Hb_007709_010--Hb_000876_050 Hb_002218_070--Hb_001410_010 Hb_002218_070--Hb_117840_010 Hb_000236_110 Hb_000236_110 Hb_002218_070--Hb_000236_110 Hb_003106_210 Hb_003106_210 Hb_002218_070--Hb_003106_210 Hb_002600_010 Hb_002600_010 Hb_002218_070--Hb_002600_010 Hb_008175_030 Hb_008175_030 Hb_002218_070--Hb_008175_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0880727 1.51268 0.0295203 0.322686 0.214617 0.056151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0215569 1.06794 0.673236

CAGE analysis