Hb_071381_010

Information

Type -
Description -
Location Contig71381: 110-522
Sequence    

Annotation

kegg
ID pop:POPTR_0001s36520g
description POPTRDRAFT_550094; hypothetical protein
nr
ID KDP21179.1
description hypothetical protein JCGZ_21650 [Jatropha curcas]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID A0A067JNV5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21650 PE=3 SV=1
Gene Ontology
ID GO:0016706
description protein srg1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071381_010 0.0 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
2 Hb_008160_020 0.0536954604 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
3 Hb_117464_010 0.0566949086 - - PREDICTED: flavone 3'-O-methyltransferase 1-like [Jatropha curcas]
4 Hb_010839_070 0.0656939116 - - uncharacterized protein LOC100810725 [Glycine max]
5 Hb_001571_010 0.0715872623 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
6 Hb_001081_020 0.073748875 - - Cytochrome P450 76C2 [Triticum urartu]
7 Hb_000405_040 0.0779134577 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
8 Hb_000640_270 0.0846075667 - - PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]
9 Hb_006196_020 0.0979538992 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100-like [Populus euphratica]
10 Hb_039342_030 0.1038021026 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000317_210 0.1047521802 transcription factor TF Family: MYB PREDICTED: transcription factor MYB39 [Jatropha curcas]
12 Hb_042664_010 0.1063430045 - - hypothetical protein POPTR_0001s07640g, partial [Populus trichocarpa]
13 Hb_001032_060 0.1158845267 - - PREDICTED: ankyrin-2-like [Citrus sinensis]
14 Hb_005747_020 0.1192571213 - - bacterial-induced peroxidase [Gossypium schwendimanii]
15 Hb_000025_250 0.1283437236 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
16 Hb_000155_140 0.1306481416 - - o-methyltransferase, putative [Ricinus communis]
17 Hb_003891_060 0.1330668731 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Glycine max]
18 Hb_002900_020 0.13317646 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
19 Hb_016172_010 0.1335688534 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
20 Hb_000563_070 0.1336770948 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]

Gene co-expression network

sample Hb_071381_010 Hb_071381_010 Hb_008160_020 Hb_008160_020 Hb_071381_010--Hb_008160_020 Hb_117464_010 Hb_117464_010 Hb_071381_010--Hb_117464_010 Hb_010839_070 Hb_010839_070 Hb_071381_010--Hb_010839_070 Hb_001571_010 Hb_001571_010 Hb_071381_010--Hb_001571_010 Hb_001081_020 Hb_001081_020 Hb_071381_010--Hb_001081_020 Hb_000405_040 Hb_000405_040 Hb_071381_010--Hb_000405_040 Hb_008160_020--Hb_117464_010 Hb_008160_020--Hb_001081_020 Hb_000640_270 Hb_000640_270 Hb_008160_020--Hb_000640_270 Hb_008160_020--Hb_010839_070 Hb_039342_030 Hb_039342_030 Hb_008160_020--Hb_039342_030 Hb_117464_010--Hb_000640_270 Hb_117464_010--Hb_001081_020 Hb_117464_010--Hb_010839_070 Hb_117464_010--Hb_039342_030 Hb_010839_070--Hb_000640_270 Hb_010839_070--Hb_001571_010 Hb_010839_070--Hb_001081_020 Hb_001571_010--Hb_117464_010 Hb_001571_010--Hb_008160_020 Hb_001571_010--Hb_000640_270 Hb_003121_020 Hb_003121_020 Hb_001571_010--Hb_003121_020 Hb_001081_020--Hb_000640_270 Hb_006196_020 Hb_006196_020 Hb_001081_020--Hb_006196_020 Hb_014034_020 Hb_014034_020 Hb_000405_040--Hb_014034_020 Hb_000025_250 Hb_000025_250 Hb_000405_040--Hb_000025_250 Hb_001032_060 Hb_001032_060 Hb_000405_040--Hb_001032_060 Hb_004254_070 Hb_004254_070 Hb_000405_040--Hb_004254_070 Hb_000229_080 Hb_000229_080 Hb_000405_040--Hb_000229_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.283273 0.113301 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.82573 0

CAGE analysis