Hb_071736_010

Information

Type -
Description -
Location Contig71736: 12912-22880
Sequence    

Annotation

kegg
ID tcc:TCM_021658
description Metallopeptidase M24 family protein isoform 1
nr
ID XP_007026646.1
description Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
swissprot
ID M1CZC0
description ERBB-3 BINDING PROTEIN 1 OS=Solanum tuberosum GN=EBP1 PE=2 SV=1
trembl
ID A0A061ER94
description Metallopeptidase M24 family protein isoform 1 OS=Theobroma cacao GN=TCM_021658 PE=4 SV=1
Gene Ontology
ID GO:0005730
description proliferation-associated protein 2g4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55501: 12988-22835
cDNA
(Sanger)
(ID:Location)		 001_M11.ab1: 12988-21717

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071736_010 0.0 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
2 Hb_005883_050 0.0537725337 - - PREDICTED: transportin-3 [Jatropha curcas]
3 Hb_005754_060 0.0669690688 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000023_140 0.0743038623 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
5 Hb_001266_080 0.0755017345 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
6 Hb_002616_050 0.078217911 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
7 Hb_001855_010 0.0880508646 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
8 Hb_002811_360 0.0885693023 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
9 Hb_003195_060 0.0889728653 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
10 Hb_011794_060 0.0892301256 - - PREDICTED: beta-amylase 2, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_004055_140 0.0903639127 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
12 Hb_039837_010 0.0909993774 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
13 Hb_000120_500 0.0912765261 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
14 Hb_005063_040 0.0917010464 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
15 Hb_000134_090 0.0926969623 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
16 Hb_033642_010 0.0932410035 - - PREDICTED: protection of telomeres protein 1a-like isoform X2 [Jatropha curcas]
17 Hb_000889_020 0.0932579085 - - ribosome biogenesis protein brix, putative [Ricinus communis]
18 Hb_011310_070 0.0935374494 - - ADP,ATP carrier protein, putative [Ricinus communis]
19 Hb_000166_110 0.0946115989 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
20 Hb_002023_020 0.0948877006 - - PREDICTED: aladin isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_071736_010 Hb_071736_010 Hb_005883_050 Hb_005883_050 Hb_071736_010--Hb_005883_050 Hb_005754_060 Hb_005754_060 Hb_071736_010--Hb_005754_060 Hb_000023_140 Hb_000023_140 Hb_071736_010--Hb_000023_140 Hb_001266_080 Hb_001266_080 Hb_071736_010--Hb_001266_080 Hb_002616_050 Hb_002616_050 Hb_071736_010--Hb_002616_050 Hb_001855_010 Hb_001855_010 Hb_071736_010--Hb_001855_010 Hb_000120_500 Hb_000120_500 Hb_005883_050--Hb_000120_500 Hb_003434_060 Hb_003434_060 Hb_005883_050--Hb_003434_060 Hb_000390_060 Hb_000390_060 Hb_005883_050--Hb_000390_060 Hb_005883_050--Hb_005754_060 Hb_004447_060 Hb_004447_060 Hb_005883_050--Hb_004447_060 Hb_009048_040 Hb_009048_040 Hb_005754_060--Hb_009048_040 Hb_000395_170 Hb_000395_170 Hb_005754_060--Hb_000395_170 Hb_005754_060--Hb_000023_140 Hb_001454_210 Hb_001454_210 Hb_005754_060--Hb_001454_210 Hb_000023_140--Hb_002616_050 Hb_000023_140--Hb_001855_010 Hb_005063_040 Hb_005063_040 Hb_000023_140--Hb_005063_040 Hb_006788_070 Hb_006788_070 Hb_000023_140--Hb_006788_070 Hb_001124_080 Hb_001124_080 Hb_001266_080--Hb_001124_080 Hb_007426_030 Hb_007426_030 Hb_001266_080--Hb_007426_030 Hb_004055_140 Hb_004055_140 Hb_001266_080--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_001266_080--Hb_009117_030 Hb_000914_070 Hb_000914_070 Hb_001266_080--Hb_000914_070 Hb_000363_500 Hb_000363_500 Hb_002616_050--Hb_000363_500 Hb_004072_020 Hb_004072_020 Hb_002616_050--Hb_004072_020 Hb_002616_050--Hb_005063_040 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020 Hb_001135_160 Hb_001135_160 Hb_001855_010--Hb_001135_160 Hb_014568_030 Hb_014568_030 Hb_001855_010--Hb_014568_030 Hb_001855_010--Hb_005063_040 Hb_001855_010--Hb_005754_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
211.095 52.1676 57.2055 94.8938 167.79 369.136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
198.121 128.65 213.95 100.161 79.6972

CAGE analysis