Hb_071736_020

Information

Type -
Description -
Location Contig71736: 24393-27172
Sequence    

Annotation

kegg
ID pop:POPTR_0006s10330g
description POPTRDRAFT_560931; hypothetical protein
nr
ID XP_002308229.1
description hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
swissprot
ID Q8RWG8
description Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B PE=1 SV=2
trembl
ID A9PHR7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s10330g PE=2 SV=1
Gene Ontology
ID GO:0005622
description ran-binding protein 1 homolog a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55502: 24527-27321
cDNA
(Sanger)
(ID:Location)		 004_B22.ab1: 24527-26642 , 036_I13.ab1: 24552-26797

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071736_020 0.0 - - hypothetical protein POPTR_0006s10330g [Populus trichocarpa]
2 Hb_002078_450 0.047276904 - - nuclear transport factor, putative [Ricinus communis]
3 Hb_001718_100 0.0566081405 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
4 Hb_000086_570 0.0588398176 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
5 Hb_001427_120 0.0644257337 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
6 Hb_000975_290 0.0699323359 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
7 Hb_021650_030 0.0732684438 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
8 Hb_003052_100 0.0746461726 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_001691_210 0.0759372653 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
10 Hb_000001_050 0.0774013677 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
11 Hb_022250_040 0.0779847815 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
12 Hb_000956_010 0.0788829576 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
13 Hb_001008_060 0.0790332047 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
14 Hb_084849_020 0.0805787501 - - ARF GTPase activator, putative [Ricinus communis]
15 Hb_000205_270 0.0814482053 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
16 Hb_002527_070 0.0819646171 - - axonemal dynein light chain, putative [Ricinus communis]
17 Hb_002411_200 0.0820810985 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005686_110 0.0822819171 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
19 Hb_000089_160 0.0850052508 - - 60S ribosomal protein L5B [Hevea brasiliensis]
20 Hb_007919_050 0.0850240683 - - PREDICTED: uncharacterized protein LOC105635142 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_071736_020 Hb_071736_020 Hb_002078_450 Hb_002078_450 Hb_071736_020--Hb_002078_450 Hb_001718_100 Hb_001718_100 Hb_071736_020--Hb_001718_100 Hb_000086_570 Hb_000086_570 Hb_071736_020--Hb_000086_570 Hb_001427_120 Hb_001427_120 Hb_071736_020--Hb_001427_120 Hb_000975_290 Hb_000975_290 Hb_071736_020--Hb_000975_290 Hb_021650_030 Hb_021650_030 Hb_071736_020--Hb_021650_030 Hb_005686_110 Hb_005686_110 Hb_002078_450--Hb_005686_110 Hb_002078_450--Hb_000086_570 Hb_009711_030 Hb_009711_030 Hb_002078_450--Hb_009711_030 Hb_002078_450--Hb_001718_100 Hb_022250_040 Hb_022250_040 Hb_002078_450--Hb_022250_040 Hb_001718_100--Hb_001427_120 Hb_001718_100--Hb_000086_570 Hb_000089_160 Hb_000089_160 Hb_001718_100--Hb_000089_160 Hb_001691_210 Hb_001691_210 Hb_001718_100--Hb_001691_210 Hb_000086_570--Hb_021650_030 Hb_000086_570--Hb_001427_120 Hb_002411_200 Hb_002411_200 Hb_000086_570--Hb_002411_200 Hb_000956_010 Hb_000956_010 Hb_001427_120--Hb_000956_010 Hb_000376_050 Hb_000376_050 Hb_001427_120--Hb_000376_050 Hb_001427_120--Hb_022250_040 Hb_002890_280 Hb_002890_280 Hb_000975_290--Hb_002890_280 Hb_133271_020 Hb_133271_020 Hb_000975_290--Hb_133271_020 Hb_158092_070 Hb_158092_070 Hb_000975_290--Hb_158092_070 Hb_001030_120 Hb_001030_120 Hb_000975_290--Hb_001030_120 Hb_002686_270 Hb_002686_270 Hb_000975_290--Hb_002686_270 Hb_000091_090 Hb_000091_090 Hb_021650_030--Hb_000091_090 Hb_021650_030--Hb_002411_200 Hb_021650_030--Hb_002078_450 Hb_014720_080 Hb_014720_080 Hb_021650_030--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_021650_030--Hb_001881_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
383.61 96.7977 66.6505 178.684 298.985 479.234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
573.13 491.376 552.618 166.028 47.6452

CAGE analysis