Hb_071923_010

Information

Type -
Description -
Location Contig71923: 235-1385
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071923_010 0.0 - - -
2 Hb_001722_020 0.1637470175 - - -
3 Hb_002249_110 0.1644235314 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
4 Hb_088774_010 0.1729444255 - - -
5 Hb_144898_010 0.1799212423 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
6 Hb_000295_090 0.1846470244 - - Clathrin light chain 2 [Glycine soja]
7 Hb_003297_020 0.1874798217 - - unknown [Populus trichocarpa x Populus deltoides]
8 Hb_176117_010 0.1932851267 - - Cold-inducible RNA-binding protein [Morus notabilis]
9 Hb_181320_010 0.1938198819 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
10 Hb_126112_010 0.1943862911 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
11 Hb_000523_100 0.1973633641 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
12 Hb_000025_100 0.199407972 - - -
13 Hb_005305_060 0.2009432102 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
14 Hb_005054_070 0.2068192014 - - unnamed protein product [Vitis vinifera]
15 Hb_001712_050 0.2117543875 - - PREDICTED: uncharacterized protein LOC105641944 [Jatropha curcas]
16 Hb_088065_010 0.2151400864 - - hypothetical protein glysoja_007934 [Glycine soja]
17 Hb_012305_040 0.2162005344 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
18 Hb_000200_040 0.216482578 - - -
19 Hb_005016_150 0.2209767616 - - -
20 Hb_124587_010 0.2213308895 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_071923_010 Hb_071923_010 Hb_001722_020 Hb_001722_020 Hb_071923_010--Hb_001722_020 Hb_002249_110 Hb_002249_110 Hb_071923_010--Hb_002249_110 Hb_088774_010 Hb_088774_010 Hb_071923_010--Hb_088774_010 Hb_144898_010 Hb_144898_010 Hb_071923_010--Hb_144898_010 Hb_000295_090 Hb_000295_090 Hb_071923_010--Hb_000295_090 Hb_003297_020 Hb_003297_020 Hb_071923_010--Hb_003297_020 Hb_001722_020--Hb_088774_010 Hb_001722_020--Hb_144898_010 Hb_005305_060 Hb_005305_060 Hb_001722_020--Hb_005305_060 Hb_005965_010 Hb_005965_010 Hb_001722_020--Hb_005965_010 Hb_000295_100 Hb_000295_100 Hb_001722_020--Hb_000295_100 Hb_002249_110--Hb_000295_090 Hb_070385_010 Hb_070385_010 Hb_002249_110--Hb_070385_010 Hb_002249_110--Hb_003297_020 Hb_115578_010 Hb_115578_010 Hb_002249_110--Hb_115578_010 Hb_001385_090 Hb_001385_090 Hb_002249_110--Hb_001385_090 Hb_088065_010 Hb_088065_010 Hb_088774_010--Hb_088065_010 Hb_015930_010 Hb_015930_010 Hb_088774_010--Hb_015930_010 Hb_000523_100 Hb_000523_100 Hb_088774_010--Hb_000523_100 Hb_000248_010 Hb_000248_010 Hb_088774_010--Hb_000248_010 Hb_000107_140 Hb_000107_140 Hb_144898_010--Hb_000107_140 Hb_181320_010 Hb_181320_010 Hb_144898_010--Hb_181320_010 Hb_144898_010--Hb_005305_060 Hb_005054_070 Hb_005054_070 Hb_144898_010--Hb_005054_070 Hb_012807_080 Hb_012807_080 Hb_144898_010--Hb_012807_080 Hb_000295_090--Hb_115578_010 Hb_130134_020 Hb_130134_020 Hb_000295_090--Hb_130134_020 Hb_000295_090--Hb_088774_010 Hb_000295_090--Hb_001385_090 Hb_000295_090--Hb_000523_100 Hb_003297_020--Hb_070385_010 Hb_007136_020 Hb_007136_020 Hb_003297_020--Hb_007136_020 Hb_101020_010 Hb_101020_010 Hb_003297_020--Hb_101020_010 Hb_124961_010 Hb_124961_010 Hb_003297_020--Hb_124961_010 Hb_001767_120 Hb_001767_120 Hb_003297_020--Hb_001767_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.02039 1.2385 2.02538 1.97663 5.14319 23.1262
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.83405 2.57648 0.221935 0.401452 0

CAGE analysis