Hb_071947_010

Information

Type -
Description -
Location Contig71947: 13822-15986
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55560: 13806-14915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_071947_010 0.0 - - -
2 Hb_000622_040 0.126410549 - - PREDICTED: uncharacterized protein LOC104596457 isoform X1 [Nelumbo nucifera]
3 Hb_005000_070 0.1278537279 - - hypothetical protein POPTR_0012s01650g [Populus trichocarpa]
4 Hb_007924_020 0.1310424533 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
5 Hb_001160_030 0.1314086433 transcription factor TF Family: Alfin-like hypothetical protein POPTR_0018s05470g [Populus trichocarpa]
6 Hb_061802_010 0.1325758011 - - hypothetical protein VITISV_011986 [Vitis vinifera]
7 Hb_001863_480 0.1431859986 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
8 Hb_028487_030 0.1447493607 - - conserved hypothetical protein [Ricinus communis]
9 Hb_164926_030 0.1450748831 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
10 Hb_002119_120 0.1456204193 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
11 Hb_001218_040 0.1463696444 - - Mitochondrial substrate carrier family protein [Theobroma cacao]
12 Hb_000061_300 0.1466933427 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
13 Hb_001439_170 0.1476336385 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
14 Hb_000012_130 0.1487741706 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
15 Hb_001616_030 0.1489951244 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
16 Hb_005539_360 0.1498900359 - - kinesin light chain, putative [Ricinus communis]
17 Hb_001898_160 0.1503256121 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
18 Hb_001575_020 0.1510582624 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004429_150 0.1514538352 - - -
20 Hb_000487_310 0.1527821897 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_071947_010 Hb_071947_010 Hb_000622_040 Hb_000622_040 Hb_071947_010--Hb_000622_040 Hb_005000_070 Hb_005000_070 Hb_071947_010--Hb_005000_070 Hb_007924_020 Hb_007924_020 Hb_071947_010--Hb_007924_020 Hb_001160_030 Hb_001160_030 Hb_071947_010--Hb_001160_030 Hb_061802_010 Hb_061802_010 Hb_071947_010--Hb_061802_010 Hb_001863_480 Hb_001863_480 Hb_071947_010--Hb_001863_480 Hb_000622_040--Hb_007924_020 Hb_000429_170 Hb_000429_170 Hb_000622_040--Hb_000429_170 Hb_000922_270 Hb_000922_270 Hb_000622_040--Hb_000922_270 Hb_009404_020 Hb_009404_020 Hb_000622_040--Hb_009404_020 Hb_034299_060 Hb_034299_060 Hb_000622_040--Hb_034299_060 Hb_000622_040--Hb_005000_070 Hb_000230_380 Hb_000230_380 Hb_005000_070--Hb_000230_380 Hb_005000_070--Hb_000429_170 Hb_005000_070--Hb_007924_020 Hb_000061_300 Hb_000061_300 Hb_005000_070--Hb_000061_300 Hb_002056_060 Hb_002056_060 Hb_005000_070--Hb_002056_060 Hb_044662_070 Hb_044662_070 Hb_007924_020--Hb_044662_070 Hb_008289_060 Hb_008289_060 Hb_007924_020--Hb_008289_060 Hb_007924_020--Hb_000429_170 Hb_003408_030 Hb_003408_030 Hb_007924_020--Hb_003408_030 Hb_003376_120 Hb_003376_120 Hb_007924_020--Hb_003376_120 Hb_003376_030 Hb_003376_030 Hb_001160_030--Hb_003376_030 Hb_002097_060 Hb_002097_060 Hb_001160_030--Hb_002097_060 Hb_001616_060 Hb_001616_060 Hb_001160_030--Hb_001616_060 Hb_001575_020 Hb_001575_020 Hb_001160_030--Hb_001575_020 Hb_000146_020 Hb_000146_020 Hb_001160_030--Hb_000146_020 Hb_001616_030 Hb_001616_030 Hb_001160_030--Hb_001616_030 Hb_000210_220 Hb_000210_220 Hb_061802_010--Hb_000210_220 Hb_000329_180 Hb_000329_180 Hb_061802_010--Hb_000329_180 Hb_061802_010--Hb_001575_020 Hb_005505_020 Hb_005505_020 Hb_061802_010--Hb_005505_020 Hb_061802_010--Hb_000061_300 Hb_001711_030 Hb_001711_030 Hb_001863_480--Hb_001711_030 Hb_004738_010 Hb_004738_010 Hb_001863_480--Hb_004738_010 Hb_003408_020 Hb_003408_020 Hb_001863_480--Hb_003408_020 Hb_001439_170 Hb_001439_170 Hb_001863_480--Hb_001439_170 Hb_171554_080 Hb_171554_080 Hb_001863_480--Hb_171554_080 Hb_002539_080 Hb_002539_080 Hb_001863_480--Hb_002539_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.28501 0.293606 0.474136 0.109313 0.651197 0.789261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.90246 1.67692 2.46441 0.582622 1.03813

CAGE analysis