Hb_072212_020

Information

Type -
Description -
Location Contig72212: 26859-29766
Sequence    

Annotation

kegg
ID rcu:RCOM_2108170
description hypothetical protein
nr
ID KJB09756.1
description hypothetical protein B456_001G162300 [Gossypium raimondii]
swissprot
ID P93286
description Cytochrome c biogenesis CcmF C-terminal-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=1 SV=2
trembl
ID A0A0D2PZN2
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G162300 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55716: 26018-29546 , PASA_asmbl_55718: 28049-28690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072212_020 0.0 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
2 Hb_062273_010 0.1058581215 - - ATP synthase F0 subunit 9 [Chara vulgaris]
3 Hb_062192_030 0.1412157931 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
4 Hb_042463_020 0.1420614337 - - conserved hypothetical protein [Ricinus communis]
5 Hb_088080_030 0.1429758245 - - ribosomal protein S4 [Hevea brasiliensis]
6 Hb_189099_020 0.1431639793 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
7 Hb_034168_070 0.1457916734 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
8 Hb_104735_020 0.1575565806 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
9 Hb_101733_010 0.1586367352 - - conserved hypothetical protein [Ricinus communis]
10 Hb_013420_010 0.1592648705 - - conserved hypothetical protein [Ricinus communis]
11 Hb_171685_040 0.1712490392 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
12 Hb_034168_010 0.1716188686 - - hypothetical protein [Azospirillum sp. CAG:260]
13 Hb_042463_070 0.1777177785 - - 60S ribosomal protein L16, putative [Ricinus communis]
14 Hb_003125_100 0.179084456 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
15 Hb_041813_030 0.1828453422 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
16 Hb_000159_020 0.1848203284 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
17 Hb_012163_050 0.1905189387 - - ATPase subunit [Medicago truncatula]
18 Hb_156746_010 0.1933202627 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
19 Hb_005154_090 0.1934296829 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_002687_070 0.1975581274 - - polyprotein [Ananas comosus]

Gene co-expression network

sample Hb_072212_020 Hb_072212_020 Hb_062273_010 Hb_062273_010 Hb_072212_020--Hb_062273_010 Hb_062192_030 Hb_062192_030 Hb_072212_020--Hb_062192_030 Hb_042463_020 Hb_042463_020 Hb_072212_020--Hb_042463_020 Hb_088080_030 Hb_088080_030 Hb_072212_020--Hb_088080_030 Hb_189099_020 Hb_189099_020 Hb_072212_020--Hb_189099_020 Hb_034168_070 Hb_034168_070 Hb_072212_020--Hb_034168_070 Hb_062273_010--Hb_042463_020 Hb_062273_010--Hb_034168_070 Hb_062273_010--Hb_062192_030 Hb_104735_020 Hb_104735_020 Hb_062273_010--Hb_104735_020 Hb_062273_010--Hb_189099_020 Hb_062192_030--Hb_189099_020 Hb_041813_030 Hb_041813_030 Hb_062192_030--Hb_041813_030 Hb_042463_070 Hb_042463_070 Hb_062192_030--Hb_042463_070 Hb_001338_080 Hb_001338_080 Hb_062192_030--Hb_001338_080 Hb_006040_160 Hb_006040_160 Hb_062192_030--Hb_006040_160 Hb_062192_030--Hb_034168_070 Hb_042463_020--Hb_034168_070 Hb_156746_010 Hb_156746_010 Hb_042463_020--Hb_156746_010 Hb_012163_050 Hb_012163_050 Hb_042463_020--Hb_012163_050 Hb_042463_020--Hb_104735_020 Hb_042463_020--Hb_042463_070 Hb_088080_030--Hb_189099_020 Hb_000920_020 Hb_000920_020 Hb_088080_030--Hb_000920_020 Hb_003746_020 Hb_003746_020 Hb_088080_030--Hb_003746_020 Hb_088080_030--Hb_062192_030 Hb_088080_030--Hb_041813_030 Hb_034168_010 Hb_034168_010 Hb_189099_020--Hb_034168_010 Hb_189099_020--Hb_000920_020 Hb_189099_020--Hb_041813_030 Hb_189099_020--Hb_001338_080 Hb_034168_070--Hb_156746_010 Hb_004643_010 Hb_004643_010 Hb_034168_070--Hb_004643_010 Hb_034168_070--Hb_041813_030 Hb_034168_070--Hb_042463_070 Hb_034168_070--Hb_012163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.142053 0.604351 0.175743 0.156031 0.080069 0.055785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.079423 0.0208295 0.432674 0.157686 6.17849

CAGE analysis