Hb_072398_010

Information

Type -
Description -
Location Contig72398: 192-1283
Sequence    

Annotation

kegg
ID rcu:RCOM_1061010
description pepsin A, putative
nr
ID XP_002528927.1
description pepsin A, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSF8
description Pepsin A, putative OS=Ricinus communis GN=RCOM_1061010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072398_010 0.0 - - pepsin A, putative [Ricinus communis]
2 Hb_014361_090 0.135287205 - - acyl-CoA binding protein 3A [Vernicia fordii]
3 Hb_002097_080 0.1386649114 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
4 Hb_002685_220 0.144715293 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
5 Hb_098795_030 0.1498276413 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
6 Hb_002495_030 0.1589792496 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
7 Hb_030565_050 0.1626054527 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
8 Hb_002559_030 0.1632646595 - - oxidoreductase, putative [Ricinus communis]
9 Hb_000152_530 0.1710457627 - - hypothetical protein SELMODRAFT_231485 [Selaginella moellendorffii]
10 Hb_000071_160 0.1748664196 - - PREDICTED: protein IQ-DOMAIN 14 [Jatropha curcas]
11 Hb_001008_080 0.175758924 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
12 Hb_152980_020 0.1796043421 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
13 Hb_000714_120 0.1799453451 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
14 Hb_004449_090 0.1820087647 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
15 Hb_000181_230 0.1828404138 - - copper ion binding protein, putative [Ricinus communis]
16 Hb_001195_380 0.1857238248 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
17 Hb_026198_020 0.1858912731 - - PREDICTED: uncharacterized protein LOC105634368 [Jatropha curcas]
18 Hb_006916_140 0.1864650984 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
19 Hb_000574_170 0.1868185644 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump-like [Jatropha curcas]
20 Hb_002110_090 0.1876874858 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_072398_010 Hb_072398_010 Hb_014361_090 Hb_014361_090 Hb_072398_010--Hb_014361_090 Hb_002097_080 Hb_002097_080 Hb_072398_010--Hb_002097_080 Hb_002685_220 Hb_002685_220 Hb_072398_010--Hb_002685_220 Hb_098795_030 Hb_098795_030 Hb_072398_010--Hb_098795_030 Hb_002495_030 Hb_002495_030 Hb_072398_010--Hb_002495_030 Hb_030565_050 Hb_030565_050 Hb_072398_010--Hb_030565_050 Hb_014361_090--Hb_030565_050 Hb_011828_010 Hb_011828_010 Hb_014361_090--Hb_011828_010 Hb_002559_030 Hb_002559_030 Hb_014361_090--Hb_002559_030 Hb_005941_030 Hb_005941_030 Hb_014361_090--Hb_005941_030 Hb_000071_160 Hb_000071_160 Hb_014361_090--Hb_000071_160 Hb_004899_340 Hb_004899_340 Hb_014361_090--Hb_004899_340 Hb_002097_080--Hb_002685_220 Hb_001976_020 Hb_001976_020 Hb_002097_080--Hb_001976_020 Hb_014361_040 Hb_014361_040 Hb_002097_080--Hb_014361_040 Hb_002097_080--Hb_098795_030 Hb_002685_160 Hb_002685_160 Hb_002097_080--Hb_002685_160 Hb_000028_580 Hb_000028_580 Hb_002097_080--Hb_000028_580 Hb_009222_080 Hb_009222_080 Hb_002685_220--Hb_009222_080 Hb_000107_550 Hb_000107_550 Hb_002685_220--Hb_000107_550 Hb_002740_100 Hb_002740_100 Hb_002685_220--Hb_002740_100 Hb_002685_220--Hb_002495_030 Hb_002685_220--Hb_001976_020 Hb_006615_230 Hb_006615_230 Hb_098795_030--Hb_006615_230 Hb_098795_030--Hb_002495_030 Hb_003470_110 Hb_003470_110 Hb_098795_030--Hb_003470_110 Hb_098795_030--Hb_001976_020 Hb_098795_030--Hb_002685_220 Hb_002495_030--Hb_006615_230 Hb_000580_110 Hb_000580_110 Hb_002495_030--Hb_000580_110 Hb_001008_080 Hb_001008_080 Hb_002495_030--Hb_001008_080 Hb_003052_080 Hb_003052_080 Hb_002495_030--Hb_003052_080 Hb_007590_100 Hb_007590_100 Hb_002495_030--Hb_007590_100 Hb_004449_090 Hb_004449_090 Hb_030565_050--Hb_004449_090 Hb_000684_220 Hb_000684_220 Hb_030565_050--Hb_000684_220 Hb_005539_140 Hb_005539_140 Hb_030565_050--Hb_005539_140 Hb_000176_080 Hb_000176_080 Hb_030565_050--Hb_000176_080 Hb_000603_020 Hb_000603_020 Hb_030565_050--Hb_000603_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.150324 0.570576 0.388656 2.18702 0.0900502 0.253613
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0550653 0 0 0.540786 1.4986

CAGE analysis