Hb_072695_010

Information

Type -
Description -
Location Contig72695: 177-770
Sequence    

Annotation

kegg
ID pop:POPTR_0013s03350g
description POPTRDRAFT_241047; hypothetical protein
nr
ID XP_011003818.1
description PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
swissprot
ID P29136
description Metalloendoproteinase 1 OS=Glycine max PE=1 SV=2
trembl
ID B9I890
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s03350g PE=4 SV=2
Gene Ontology
ID GO:0031012
description metalloendoproteinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072695_010 0.0 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
2 Hb_125153_010 0.0571232484 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Malus domestica]
3 Hb_001790_110 0.0626985093 - - unknown [Populus trichocarpa]
4 Hb_000959_380 0.0704276387 - - PREDICTED: (-)-alpha-terpineol synthase-like [Vitis vinifera]
5 Hb_151061_040 0.07235008 - - putative retrotransposon protein [Phyllostachys edulis]
6 Hb_000388_020 0.0742852777 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
7 Hb_054839_010 0.0745259209 - - PsbC, partial (chloroplast) [Asimina parviflora]
8 Hb_005087_020 0.0780712111 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
9 Hb_103255_010 0.078777093 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_006302_050 0.0842704965 - - PREDICTED: uncharacterized protein LOC104804969, partial [Tarenaya hassleriana]
11 Hb_005914_030 0.0849500996 - - -
12 Hb_104509_010 0.0860550781 - - photosystem II CP43 chlorophyll apoprotein (chloroplast) [Ficus sp. Moore 315]
13 Hb_003144_020 0.0861026144 - - (R)-limonene synthase, putative [Ricinus communis]
14 Hb_005224_020 0.0888903906 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
15 Hb_000326_100 0.0938430504 transcription factor TF Family: MYB-related DnaJ homolog subfamily C member 2 [Morus notabilis]
16 Hb_131816_010 0.0940952189 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
17 Hb_000002_470 0.0975966848 - - hypothetical protein JCGZ_11185 [Jatropha curcas]
18 Hb_000003_630 0.0975966848 - - ATP-binding cassette transporter, putative [Ricinus communis]
19 Hb_000004_050 0.0975966848 - - PREDICTED: uncharacterized protein LOC105766968 [Gossypium raimondii]
20 Hb_000007_350 0.0975966848 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_072695_010 Hb_072695_010 Hb_125153_010 Hb_125153_010 Hb_072695_010--Hb_125153_010 Hb_001790_110 Hb_001790_110 Hb_072695_010--Hb_001790_110 Hb_000959_380 Hb_000959_380 Hb_072695_010--Hb_000959_380 Hb_151061_040 Hb_151061_040 Hb_072695_010--Hb_151061_040 Hb_000388_020 Hb_000388_020 Hb_072695_010--Hb_000388_020 Hb_054839_010 Hb_054839_010 Hb_072695_010--Hb_054839_010 Hb_125153_010--Hb_151061_040 Hb_125153_010--Hb_054839_010 Hb_005087_020 Hb_005087_020 Hb_125153_010--Hb_005087_020 Hb_125153_010--Hb_000388_020 Hb_005914_030 Hb_005914_030 Hb_125153_010--Hb_005914_030 Hb_001790_110--Hb_005087_020 Hb_000907_010 Hb_000907_010 Hb_001790_110--Hb_000907_010 Hb_001790_110--Hb_000959_380 Hb_131816_010 Hb_131816_010 Hb_001790_110--Hb_131816_010 Hb_104509_010 Hb_104509_010 Hb_001790_110--Hb_104509_010 Hb_003144_020 Hb_003144_020 Hb_000959_380--Hb_003144_020 Hb_000959_380--Hb_131816_010 Hb_000959_380--Hb_005914_030 Hb_000959_380--Hb_104509_010 Hb_000326_100 Hb_000326_100 Hb_000959_380--Hb_000326_100 Hb_005224_020 Hb_005224_020 Hb_000959_380--Hb_005224_020 Hb_000031_070 Hb_000031_070 Hb_151061_040--Hb_000031_070 Hb_001338_010 Hb_001338_010 Hb_151061_040--Hb_001338_010 Hb_151061_040--Hb_005087_020 Hb_151061_040--Hb_054839_010 Hb_001779_050 Hb_001779_050 Hb_151061_040--Hb_001779_050 Hb_000388_020--Hb_054839_010 Hb_006302_050 Hb_006302_050 Hb_000388_020--Hb_006302_050 Hb_007645_040 Hb_007645_040 Hb_000388_020--Hb_007645_040 Hb_000388_020--Hb_104509_010 Hb_106850_010 Hb_106850_010 Hb_000388_020--Hb_106850_010 Hb_103255_010 Hb_103255_010 Hb_000388_020--Hb_103255_010 Hb_054839_010--Hb_005087_020 Hb_054839_010--Hb_006302_050 Hb_054839_010--Hb_104509_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.916667 0.380478 7.53044 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12751 1.36943 0 0 587.227

CAGE analysis