Hb_072912_010

Information

Type -
Description -
Location Contig72912: 82-1605
Sequence    

Annotation

kegg
ID cit:102617255
description uncharacterized LOC102617255
nr
ID XP_012081735.1
description PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A5C0F9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072912_010 0.0 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
2 Hb_002301_020 0.139493535 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
3 Hb_001425_120 0.1682576394 - - PREDICTED: isoprenylcysteine alpha-carbonyl methylesterase ICME isoform X2 [Jatropha curcas]
4 Hb_000907_100 0.1718923444 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
5 Hb_000155_070 0.1722060257 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
6 Hb_000720_180 0.1725928153 - - -
7 Hb_000155_080 0.1738899789 - - guanylate-binding family protein [Populus trichocarpa]
8 Hb_019654_070 0.1839772341 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
9 Hb_007810_060 0.1860067193 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004545_150 0.1913620003 - - PREDICTED: paramyosin [Jatropha curcas]
11 Hb_006198_050 0.1925616476 - - protein with unknown function [Ricinus communis]
12 Hb_005488_100 0.193938795 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
13 Hb_002960_120 0.195831383 - - PREDICTED: uncharacterized protein LOC105635318 [Jatropha curcas]
14 Hb_004884_060 0.1972396147 transcription factor TF Family: G2-like PREDICTED: putative Myb family transcription factor At1g14600 [Jatropha curcas]
15 Hb_010931_100 0.1996306903 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
16 Hb_002989_080 0.200743734 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
17 Hb_003813_100 0.2008147343 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
18 Hb_000856_100 0.2039381685 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
19 Hb_000603_200 0.2041358802 - - PREDICTED: myosin-15 [Jatropha curcas]
20 Hb_094437_070 0.209073998 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]

Gene co-expression network

sample Hb_072912_010 Hb_072912_010 Hb_002301_020 Hb_002301_020 Hb_072912_010--Hb_002301_020 Hb_001425_120 Hb_001425_120 Hb_072912_010--Hb_001425_120 Hb_000907_100 Hb_000907_100 Hb_072912_010--Hb_000907_100 Hb_000155_070 Hb_000155_070 Hb_072912_010--Hb_000155_070 Hb_000720_180 Hb_000720_180 Hb_072912_010--Hb_000720_180 Hb_000155_080 Hb_000155_080 Hb_072912_010--Hb_000155_080 Hb_002301_020--Hb_000155_070 Hb_000442_030 Hb_000442_030 Hb_002301_020--Hb_000442_030 Hb_000563_540 Hb_000563_540 Hb_002301_020--Hb_000563_540 Hb_005488_100 Hb_005488_100 Hb_002301_020--Hb_005488_100 Hb_000571_070 Hb_000571_070 Hb_002301_020--Hb_000571_070 Hb_010931_100 Hb_010931_100 Hb_002301_020--Hb_010931_100 Hb_001425_120--Hb_002301_020 Hb_000548_040 Hb_000548_040 Hb_001425_120--Hb_000548_040 Hb_004545_150 Hb_004545_150 Hb_001425_120--Hb_004545_150 Hb_000270_420 Hb_000270_420 Hb_001425_120--Hb_000270_420 Hb_007810_060 Hb_007810_060 Hb_001425_120--Hb_007810_060 Hb_001425_120--Hb_000571_070 Hb_004884_060 Hb_004884_060 Hb_000907_100--Hb_004884_060 Hb_000907_100--Hb_000155_070 Hb_000907_100--Hb_000571_070 Hb_000907_100--Hb_002301_020 Hb_004126_010 Hb_004126_010 Hb_000907_100--Hb_004126_010 Hb_003906_110 Hb_003906_110 Hb_000907_100--Hb_003906_110 Hb_000914_060 Hb_000914_060 Hb_000155_070--Hb_000914_060 Hb_003327_060 Hb_003327_060 Hb_000155_070--Hb_003327_060 Hb_003627_020 Hb_003627_020 Hb_000155_070--Hb_003627_020 Hb_000155_070--Hb_004126_010 Hb_003018_180 Hb_003018_180 Hb_000720_180--Hb_003018_180 Hb_000720_180--Hb_004545_150 Hb_029879_080 Hb_029879_080 Hb_000720_180--Hb_029879_080 Hb_001631_070 Hb_001631_070 Hb_000720_180--Hb_001631_070 Hb_000720_180--Hb_002301_020 Hb_003745_010 Hb_003745_010 Hb_000720_180--Hb_003745_010 Hb_019654_070 Hb_019654_070 Hb_000155_080--Hb_019654_070 Hb_000172_610 Hb_000172_610 Hb_000155_080--Hb_000172_610 Hb_098315_100 Hb_098315_100 Hb_000155_080--Hb_098315_100 Hb_002627_060 Hb_002627_060 Hb_000155_080--Hb_002627_060 Hb_000856_100 Hb_000856_100 Hb_000155_080--Hb_000856_100 Hb_009193_130 Hb_009193_130 Hb_000155_080--Hb_009193_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.628647 0 0 0 0.289205 0.88653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.490288 0.0770678 0.405534 0.0631373 0

CAGE analysis