Hb_072922_020

Information

Type -
Description -
Location Contig72922: 14534-19484
Sequence    

Annotation

kegg
ID tcc:TCM_037091
description SNARE-like superfamily protein
nr
ID XP_007011973.1
description SNARE-like superfamily protein [Theobroma cacao]
swissprot
ID Q9ZRD6
description VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1
trembl
ID A0A061GKB5
description SNARE-like superfamily protein OS=Theobroma cacao GN=TCM_037091 PE=4 SV=1
Gene Ontology
ID GO:0016021
description vamp-like protein ykt61

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55915: 14586-19308
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_072922_020 0.0 - - SNARE-like superfamily protein [Theobroma cacao]
2 Hb_005463_140 0.0567898375 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
3 Hb_000384_120 0.0591047997 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
4 Hb_000087_130 0.0665337765 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
5 Hb_000302_280 0.0702045911 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
6 Hb_000254_050 0.0750262028 - - hypothetical protein VITISV_010510 [Vitis vinifera]
7 Hb_000789_230 0.077897071 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
8 Hb_000030_200 0.0799721696 - - PREDICTED: early nodulin-93-like [Populus euphratica]
9 Hb_002324_010 0.0808101434 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
10 Hb_005269_080 0.0821379868 - - protein with unknown function [Ricinus communis]
11 Hb_003880_030 0.0821786688 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
12 Hb_001512_080 0.0839411639 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
13 Hb_000016_080 0.0845386725 - - PREDICTED: uncharacterized protein LOC105648533 [Jatropha curcas]
14 Hb_001053_140 0.0867770001 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
15 Hb_002000_140 0.0868963243 - - PREDICTED: thioredoxin Y2, chloroplastic [Jatropha curcas]
16 Hb_000224_140 0.0870009562 - - ribonuclease z, chloroplast, putative [Ricinus communis]
17 Hb_006915_040 0.0872519243 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
18 Hb_003376_190 0.0878807635 - - syntaxin, putative [Ricinus communis]
19 Hb_068056_030 0.090517789 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
20 Hb_001155_040 0.0906293812 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]

Gene co-expression network

sample Hb_072922_020 Hb_072922_020 Hb_005463_140 Hb_005463_140 Hb_072922_020--Hb_005463_140 Hb_000384_120 Hb_000384_120 Hb_072922_020--Hb_000384_120 Hb_000087_130 Hb_000087_130 Hb_072922_020--Hb_000087_130 Hb_000302_280 Hb_000302_280 Hb_072922_020--Hb_000302_280 Hb_000254_050 Hb_000254_050 Hb_072922_020--Hb_000254_050 Hb_000789_230 Hb_000789_230 Hb_072922_020--Hb_000789_230 Hb_000224_140 Hb_000224_140 Hb_005463_140--Hb_000224_140 Hb_001155_040 Hb_001155_040 Hb_005463_140--Hb_001155_040 Hb_068056_030 Hb_068056_030 Hb_005463_140--Hb_068056_030 Hb_001512_080 Hb_001512_080 Hb_005463_140--Hb_001512_080 Hb_005463_140--Hb_000302_280 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002324_010 Hb_002324_010 Hb_000384_120--Hb_002324_010 Hb_000087_130--Hb_001155_040 Hb_006915_040 Hb_006915_040 Hb_000087_130--Hb_006915_040 Hb_000948_220 Hb_000948_220 Hb_000087_130--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_000087_130--Hb_000030_200 Hb_000087_130--Hb_000384_120 Hb_001369_170 Hb_001369_170 Hb_000302_280--Hb_001369_170 Hb_000302_280--Hb_000384_120 Hb_003376_190 Hb_003376_190 Hb_000302_280--Hb_003376_190 Hb_000707_020 Hb_000707_020 Hb_000302_280--Hb_000707_020 Hb_002110_200 Hb_002110_200 Hb_000254_050--Hb_002110_200 Hb_000254_050--Hb_001512_080 Hb_000016_080 Hb_000016_080 Hb_000254_050--Hb_000016_080 Hb_000254_050--Hb_000789_230 Hb_000571_020 Hb_000571_020 Hb_000254_050--Hb_000571_020 Hb_000254_050--Hb_005269_080 Hb_000789_230--Hb_000016_080 Hb_000789_230--Hb_002110_200 Hb_007065_010 Hb_007065_010 Hb_000789_230--Hb_007065_010 Hb_017413_010 Hb_017413_010 Hb_000789_230--Hb_017413_010 Hb_000789_230--Hb_005463_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3651 8.16079 15.884 37.047 13.24 15.5818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.2738 89.626 39.5609 26.3478 24.6189

CAGE analysis