Hb_073096_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig73096: 1-391
Sequence    

Annotation

kegg
ID rcu:RCOM_1341410
description transcription factor, putative
nr
ID XP_012083071.1
description PREDICTED: NAC domain-containing protein 45-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID R4NEW9
description NAC transcription factor 065 OS=Jatropha curcas PE=4 SV=1
Gene Ontology
ID GO:0005634
description nac domain-containing protein 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073096_010 0.0 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 45-like [Jatropha curcas]
2 Hb_001131_070 0.1497651394 - - PREDICTED: uncharacterized protein LOC105638217 [Jatropha curcas]
3 Hb_000699_190 0.1924863725 - - unknown [Populus trichocarpa]
4 Hb_002461_080 0.1932869541 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
5 Hb_008554_010 0.1962058178 - - -
6 Hb_000181_450 0.2091924525 - - hypothetical protein JCGZ_20984 [Jatropha curcas]
7 Hb_000221_070 0.223487822 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003216_020 0.2264121275 transcription factor TF Family: Orphans PREDICTED: histidine kinase 2 [Jatropha curcas]
9 Hb_004195_030 0.2303749283 - - hypothetical protein POPTR_0006s17880g, partial [Populus trichocarpa]
10 Hb_160459_030 0.2358098704 - - PREDICTED: uncharacterized protein LOC105648122 [Jatropha curcas]
11 Hb_001628_030 0.2359586739 - - PREDICTED: uncharacterized protein LOC105629266 isoform X1 [Jatropha curcas]
12 Hb_010921_090 0.2377278 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
13 Hb_001373_080 0.2389725199 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_022206_030 0.2462831605 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
15 Hb_000000_280 0.2471677877 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001454_360 0.247204506 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
17 Hb_009510_050 0.2493154034 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001791_010 0.2503455225 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Jatropha curcas]
19 Hb_066320_010 0.2520978437 - - hypothetical protein VITISV_027639 [Vitis vinifera]
20 Hb_000991_110 0.2525678496 - - PREDICTED: uncharacterized protein LOC105636336 [Jatropha curcas]

Gene co-expression network

sample Hb_073096_010 Hb_073096_010 Hb_001131_070 Hb_001131_070 Hb_073096_010--Hb_001131_070 Hb_000699_190 Hb_000699_190 Hb_073096_010--Hb_000699_190 Hb_002461_080 Hb_002461_080 Hb_073096_010--Hb_002461_080 Hb_008554_010 Hb_008554_010 Hb_073096_010--Hb_008554_010 Hb_000181_450 Hb_000181_450 Hb_073096_010--Hb_000181_450 Hb_000221_070 Hb_000221_070 Hb_073096_010--Hb_000221_070 Hb_001131_070--Hb_008554_010 Hb_004195_030 Hb_004195_030 Hb_001131_070--Hb_004195_030 Hb_001131_070--Hb_000699_190 Hb_001131_070--Hb_002461_080 Hb_001373_080 Hb_001373_080 Hb_001131_070--Hb_001373_080 Hb_042553_010 Hb_042553_010 Hb_000699_190--Hb_042553_010 Hb_004611_060 Hb_004611_060 Hb_000699_190--Hb_004611_060 Hb_187697_010 Hb_187697_010 Hb_000699_190--Hb_187697_010 Hb_007137_030 Hb_007137_030 Hb_000699_190--Hb_007137_030 Hb_002461_080--Hb_000181_450 Hb_002461_080--Hb_008554_010 Hb_011861_110 Hb_011861_110 Hb_002461_080--Hb_011861_110 Hb_002461_080--Hb_001373_080 Hb_008554_010--Hb_001373_080 Hb_008554_010--Hb_004195_030 Hb_000431_180 Hb_000431_180 Hb_008554_010--Hb_000431_180 Hb_000331_690 Hb_000331_690 Hb_008554_010--Hb_000331_690 Hb_160459_030 Hb_160459_030 Hb_000181_450--Hb_160459_030 Hb_001934_010 Hb_001934_010 Hb_000181_450--Hb_001934_010 Hb_000181_450--Hb_000221_070 Hb_000181_450--Hb_008554_010 Hb_002984_030 Hb_002984_030 Hb_000181_450--Hb_002984_030 Hb_000221_070--Hb_160459_030 Hb_000221_070--Hb_002984_030 Hb_006550_010 Hb_006550_010 Hb_000221_070--Hb_006550_010 Hb_000221_070--Hb_001934_010 Hb_001277_420 Hb_001277_420 Hb_000221_070--Hb_001277_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.9758 1.5921 3.56751 0 1.42216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.547602 0 1.77011 0

CAGE analysis