Hb_073119_010

Information

Type -
Description -
Location Contig73119: 4356-9538
Sequence    

Annotation

kegg
ID pop:POPTR_0004s20690g
description hypothetical protein
nr
ID XP_006384740.1
description hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID U5GML6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s20690g PE=4 SV=1
Gene Ontology
ID GO:0005515
description lrr and nb-arc domains-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56005: 4207-5462 , PASA_asmbl_56008: 7326-7932 , PASA_asmbl_56011: 9352-9544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073119_010 0.0 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
2 Hb_003556_070 0.0841477353 - - metal ion binding protein, putative [Ricinus communis]
3 Hb_000098_250 0.108398032 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
4 Hb_000819_010 0.1088331525 - - Receptor-like protein kinase 1, putative [Theobroma cacao]
5 Hb_000094_010 0.1112619969 - - lrr receptor protein kinase, putative [Ricinus communis]
6 Hb_017604_020 0.1154410096 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
7 Hb_000003_420 0.1158040208 - - o-methyltransferase, putative [Ricinus communis]
8 Hb_000473_080 0.1197111942 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
9 Hb_000280_110 0.122472443 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_020648_020 0.122556544 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
11 Hb_003914_050 0.123318737 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]
12 Hb_000522_130 0.1250089454 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
13 Hb_010080_020 0.129247829 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
14 Hb_002529_080 0.1310440491 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]
15 Hb_000977_090 0.1313134002 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
16 Hb_000808_160 0.1331122106 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
17 Hb_004459_110 0.1339295395 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
18 Hb_002410_010 0.134179447 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
19 Hb_000338_030 0.1346926922 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
20 Hb_000668_160 0.1348524521 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]

Gene co-expression network

sample Hb_073119_010 Hb_073119_010 Hb_003556_070 Hb_003556_070 Hb_073119_010--Hb_003556_070 Hb_000098_250 Hb_000098_250 Hb_073119_010--Hb_000098_250 Hb_000819_010 Hb_000819_010 Hb_073119_010--Hb_000819_010 Hb_000094_010 Hb_000094_010 Hb_073119_010--Hb_000094_010 Hb_017604_020 Hb_017604_020 Hb_073119_010--Hb_017604_020 Hb_000003_420 Hb_000003_420 Hb_073119_010--Hb_000003_420 Hb_003556_070--Hb_000098_250 Hb_003556_070--Hb_017604_020 Hb_000120_070 Hb_000120_070 Hb_003556_070--Hb_000120_070 Hb_000280_110 Hb_000280_110 Hb_003556_070--Hb_000280_110 Hb_000977_090 Hb_000977_090 Hb_003556_070--Hb_000977_090 Hb_002410_010 Hb_002410_010 Hb_000098_250--Hb_002410_010 Hb_117127_010 Hb_117127_010 Hb_000098_250--Hb_117127_010 Hb_008667_030 Hb_008667_030 Hb_000098_250--Hb_008667_030 Hb_002529_080 Hb_002529_080 Hb_000098_250--Hb_002529_080 Hb_020648_020 Hb_020648_020 Hb_000098_250--Hb_020648_020 Hb_000771_030 Hb_000771_030 Hb_000098_250--Hb_000771_030 Hb_000668_160 Hb_000668_160 Hb_000819_010--Hb_000668_160 Hb_009803_030 Hb_009803_030 Hb_000819_010--Hb_009803_030 Hb_000819_010--Hb_000280_110 Hb_010921_060 Hb_010921_060 Hb_000819_010--Hb_010921_060 Hb_008040_060 Hb_008040_060 Hb_000819_010--Hb_008040_060 Hb_000522_130 Hb_000522_130 Hb_000819_010--Hb_000522_130 Hb_000094_010--Hb_002529_080 Hb_003914_050 Hb_003914_050 Hb_000094_010--Hb_003914_050 Hb_000116_290 Hb_000116_290 Hb_000094_010--Hb_000116_290 Hb_000094_010--Hb_008040_060 Hb_000976_340 Hb_000976_340 Hb_000094_010--Hb_000976_340 Hb_000094_010--Hb_000522_130 Hb_001699_050 Hb_001699_050 Hb_017604_020--Hb_001699_050 Hb_002276_100 Hb_002276_100 Hb_017604_020--Hb_002276_100 Hb_000808_160 Hb_000808_160 Hb_017604_020--Hb_000808_160 Hb_004544_090 Hb_004544_090 Hb_017604_020--Hb_004544_090 Hb_009510_050 Hb_009510_050 Hb_017604_020--Hb_009510_050 Hb_000397_090 Hb_000397_090 Hb_000003_420--Hb_000397_090 Hb_000473_080 Hb_000473_080 Hb_000003_420--Hb_000473_080 Hb_029866_050 Hb_029866_050 Hb_000003_420--Hb_029866_050 Hb_006698_020 Hb_006698_020 Hb_000003_420--Hb_006698_020 Hb_000363_110 Hb_000363_110 Hb_000003_420--Hb_000363_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0739543 9.99555 2.24548 2.25636 0.0534873 0.171774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0550423 0.119115 0.124387 3.03566 1.17935

CAGE analysis