Hb_073171_010

Information

Type -
Description -
Location Contig73171: 7431-15925
Sequence    

Annotation

kegg
ID rcu:RCOM_1490210
description ATP-binding cassette transporter, putative (EC:3.6.3.28)
nr
ID XP_012069091.1
description PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
swissprot
ID Q9XIE2
description ABC transporter G family member 36 OS=Arabidopsis thaliana GN=ABCG36 PE=1 SV=1
trembl
ID A0A067KXD6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24865 PE=4 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 29-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56075: 7485-7775 , PASA_asmbl_56076: 8015-11967 , PASA_asmbl_56078: 12728-14195 , PASA_asmbl_56079: 14208-14932 , PASA_asmbl_56080: 14939-15910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073171_010 0.0 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
2 Hb_001259_100 0.1034776095 - - chloride channel-like family protein [Populus trichocarpa]
3 Hb_052764_080 0.1169800005 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
4 Hb_000152_250 0.1245936714 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
5 Hb_015473_010 0.1269751354 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
6 Hb_005183_200 0.1282343544 - - EG964 [Manihot glaziovii]
7 Hb_001823_070 0.1343156412 - - PREDICTED: uncharacterized protein LOC105637371 [Jatropha curcas]
8 Hb_006364_020 0.1374514501 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
9 Hb_010381_110 0.1415199463 - - PRA1 family protein [Theobroma cacao]
10 Hb_000907_120 0.1420115308 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
11 Hb_006020_010 0.1443758192 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
12 Hb_000429_110 0.1469661437 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein WIP2-like [Populus euphratica]
13 Hb_003439_090 0.1494344568 - - kinase, putative [Ricinus communis]
14 Hb_001401_070 0.1503473678 - - glycogenin, putative [Ricinus communis]
15 Hb_004044_030 0.1512482949 - - PREDICTED: uncharacterized protein LOC105639335 [Jatropha curcas]
16 Hb_003430_020 0.1521718919 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
17 Hb_000111_190 0.1539350257 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
18 Hb_001862_170 0.1542039943 - - zinc finger protein, putative [Ricinus communis]
19 Hb_002735_010 0.1548536709 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
20 Hb_001976_120 0.1582685834 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_073171_010 Hb_073171_010 Hb_001259_100 Hb_001259_100 Hb_073171_010--Hb_001259_100 Hb_052764_080 Hb_052764_080 Hb_073171_010--Hb_052764_080 Hb_000152_250 Hb_000152_250 Hb_073171_010--Hb_000152_250 Hb_015473_010 Hb_015473_010 Hb_073171_010--Hb_015473_010 Hb_005183_200 Hb_005183_200 Hb_073171_010--Hb_005183_200 Hb_001823_070 Hb_001823_070 Hb_073171_010--Hb_001823_070 Hb_001259_100--Hb_052764_080 Hb_001259_100--Hb_005183_200 Hb_000429_110 Hb_000429_110 Hb_001259_100--Hb_000429_110 Hb_004044_030 Hb_004044_030 Hb_001259_100--Hb_004044_030 Hb_010381_110 Hb_010381_110 Hb_001259_100--Hb_010381_110 Hb_000977_090 Hb_000977_090 Hb_052764_080--Hb_000977_090 Hb_052764_080--Hb_005183_200 Hb_052764_080--Hb_000429_110 Hb_000720_210 Hb_000720_210 Hb_052764_080--Hb_000720_210 Hb_000152_250--Hb_015473_010 Hb_000907_120 Hb_000907_120 Hb_000152_250--Hb_000907_120 Hb_002735_010 Hb_002735_010 Hb_000152_250--Hb_002735_010 Hb_003439_090 Hb_003439_090 Hb_000152_250--Hb_003439_090 Hb_000521_210 Hb_000521_210 Hb_000152_250--Hb_000521_210 Hb_006020_010 Hb_006020_010 Hb_000152_250--Hb_006020_010 Hb_015473_010--Hb_002735_010 Hb_015473_010--Hb_000521_210 Hb_002110_210 Hb_002110_210 Hb_015473_010--Hb_002110_210 Hb_015473_010--Hb_003439_090 Hb_015473_010--Hb_001823_070 Hb_003430_020 Hb_003430_020 Hb_005183_200--Hb_003430_020 Hb_001515_050 Hb_001515_050 Hb_005183_200--Hb_001515_050 Hb_003439_020 Hb_003439_020 Hb_005183_200--Hb_003439_020 Hb_009581_040 Hb_009581_040 Hb_005183_200--Hb_009581_040 Hb_074312_020 Hb_074312_020 Hb_005183_200--Hb_074312_020 Hb_006364_020 Hb_006364_020 Hb_001823_070--Hb_006364_020 Hb_126466_010 Hb_126466_010 Hb_001823_070--Hb_126466_010 Hb_000111_190 Hb_000111_190 Hb_001823_070--Hb_000111_190 Hb_002477_080 Hb_002477_080 Hb_001823_070--Hb_002477_080 Hb_001823_070--Hb_000152_250 Hb_130967_010 Hb_130967_010 Hb_001823_070--Hb_130967_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00878393 17.774 2.02786 14.5252 0.0270137 0.0106602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.418197 0.483172 0.471707 11.5266 2.30123

CAGE analysis