Hb_073171_040

Information

Type -
Description -
Location Contig73171: 38245-46054
Sequence    

Annotation

kegg
ID rcu:RCOM_1489870
description malic enzyme, putative (EC:1.1.1.40)
nr
ID XP_002515967.1
description malic enzyme, putative [Ricinus communis]
swissprot
ID P51615
description NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1
trembl
ID B9RQE8
description Malic enzyme OS=Ricinus communis GN=RCOM_1489870 PE=3 SV=1
Gene Ontology
ID GO:0004471
description nadp-dependent malic enzyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56081: 38230-46048 , PASA_asmbl_56082: 43890-45785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073171_040 0.0 - - malic enzyme, putative [Ricinus communis]
2 Hb_001141_020 0.0806776849 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
3 Hb_008511_130 0.0834277506 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
4 Hb_000010_090 0.0844185294 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
5 Hb_000618_030 0.0858305255 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
6 Hb_002997_080 0.0861977197 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
7 Hb_000679_130 0.0887160467 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_000498_010 0.0931800398 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_009467_060 0.0946292356 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
10 Hb_002681_050 0.0948569703 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
11 Hb_000025_110 0.0979397764 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
12 Hb_028089_010 0.0983234901 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
13 Hb_001444_010 0.0997276201 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
14 Hb_000606_090 0.1015976385 - - Far upstream element-binding protein, putative [Ricinus communis]
15 Hb_004994_040 0.1022746915 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
16 Hb_009548_020 0.1028389166 - - structural constituent of cell wall, putative [Ricinus communis]
17 Hb_001100_050 0.1030046646 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
18 Hb_003813_040 0.1038445592 - - PREDICTED: elongator complex protein 5 [Jatropha curcas]
19 Hb_000020_190 0.105373915 - - hypothetical protein RCOM_0452240 [Ricinus communis]
20 Hb_003641_050 0.1055475236 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_073171_040 Hb_073171_040 Hb_001141_020 Hb_001141_020 Hb_073171_040--Hb_001141_020 Hb_008511_130 Hb_008511_130 Hb_073171_040--Hb_008511_130 Hb_000010_090 Hb_000010_090 Hb_073171_040--Hb_000010_090 Hb_000618_030 Hb_000618_030 Hb_073171_040--Hb_000618_030 Hb_002997_080 Hb_002997_080 Hb_073171_040--Hb_002997_080 Hb_000679_130 Hb_000679_130 Hb_073171_040--Hb_000679_130 Hb_009467_060 Hb_009467_060 Hb_001141_020--Hb_009467_060 Hb_188063_020 Hb_188063_020 Hb_001141_020--Hb_188063_020 Hb_003025_110 Hb_003025_110 Hb_001141_020--Hb_003025_110 Hb_000883_020 Hb_000883_020 Hb_001141_020--Hb_000883_020 Hb_009548_020 Hb_009548_020 Hb_001141_020--Hb_009548_020 Hb_030736_100 Hb_030736_100 Hb_001141_020--Hb_030736_100 Hb_000141_250 Hb_000141_250 Hb_008511_130--Hb_000141_250 Hb_008511_130--Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_008511_130--Hb_000230_560 Hb_000390_170 Hb_000390_170 Hb_008511_130--Hb_000390_170 Hb_000618_040 Hb_000618_040 Hb_008511_130--Hb_000618_040 Hb_000094_300 Hb_000094_300 Hb_008511_130--Hb_000094_300 Hb_000010_090--Hb_000618_030 Hb_000299_040 Hb_000299_040 Hb_000010_090--Hb_000299_040 Hb_000053_130 Hb_000053_130 Hb_000010_090--Hb_000053_130 Hb_000451_010 Hb_000451_010 Hb_000010_090--Hb_000451_010 Hb_003728_080 Hb_003728_080 Hb_000010_090--Hb_003728_080 Hb_009627_010 Hb_009627_010 Hb_000618_030--Hb_009627_010 Hb_000025_110 Hb_000025_110 Hb_000618_030--Hb_000025_110 Hb_001444_010 Hb_001444_010 Hb_000618_030--Hb_001444_010 Hb_001493_030 Hb_001493_030 Hb_000618_030--Hb_001493_030 Hb_000538_100 Hb_000538_100 Hb_000618_030--Hb_000538_100 Hb_000879_200 Hb_000879_200 Hb_000618_030--Hb_000879_200 Hb_002997_080--Hb_000230_560 Hb_000260_100 Hb_000260_100 Hb_002997_080--Hb_000260_100 Hb_002997_080--Hb_000883_020 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_000679_130--Hb_000025_110 Hb_000679_130--Hb_001444_010 Hb_000367_130 Hb_000367_130 Hb_000679_130--Hb_000367_130 Hb_001599_030 Hb_001599_030 Hb_000679_130--Hb_001599_030 Hb_007262_020 Hb_007262_020 Hb_000679_130--Hb_007262_020 Hb_006915_060 Hb_006915_060 Hb_000679_130--Hb_006915_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
127.125 55.193 95.0638 70.3795 137.345 161.554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
131.251 57.6754 132.138 50.564 93.3814

CAGE analysis