Hb_073171_050

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig73171: 51706-56029
Sequence    

Annotation

kegg
ID rcu:RCOM_1489460
description DNA binding protein, putative
nr
ID XP_012069084.1
description PREDICTED: myb-like protein H [Jatropha curcas]
swissprot
ID Q2V9B0
description Transcription factor MYB1R1 OS=Solanum tuberosum PE=2 SV=1
trembl
ID A0A067KXJ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24861 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56085: 52917-53173 , PASA_asmbl_56086: 51670-54613 , PASA_asmbl_56087: 55182-55409
cDNA
(Sanger)
(ID:Location)		 024_C03.ab1: 51670-54613

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073171_050 0.0 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
2 Hb_001369_020 0.0857344592 - - PREDICTED: U-box domain-containing protein 35-like [Jatropha curcas]
3 Hb_002999_130 0.0918318666 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0008s08740g [Populus trichocarpa]
4 Hb_007193_030 0.0995623415 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
5 Hb_028285_020 0.1010963839 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
6 Hb_001623_410 0.1095265677 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
7 Hb_012799_040 0.1162723339 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
8 Hb_000985_140 0.1176087019 - - PREDICTED: uncharacterized protein LOC105643381 isoform X3 [Jatropha curcas]
9 Hb_002783_140 0.1178334179 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
10 Hb_001660_130 0.1207271892 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
11 Hb_003905_040 0.1209638209 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
12 Hb_000656_260 0.1243004446 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
13 Hb_001357_060 0.1278095681 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
14 Hb_183025_010 0.1349191815 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
15 Hb_002596_090 0.1359748775 - - PREDICTED: calcium-transporting ATPase 4, plasma membrane-type-like isoform X1 [Jatropha curcas]
16 Hb_010812_060 0.1367410289 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
17 Hb_003029_010 0.1369267085 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
18 Hb_004393_030 0.1370946631 - - CBL-interacting protein kinase 6 [Populus trichocarpa]
19 Hb_029584_110 0.1399925441 transcription factor TF Family: MYB-related PREDICTED: myb-like protein J [Jatropha curcas]
20 Hb_004907_070 0.1400181773 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]

Gene co-expression network

sample Hb_073171_050 Hb_073171_050 Hb_001369_020 Hb_001369_020 Hb_073171_050--Hb_001369_020 Hb_002999_130 Hb_002999_130 Hb_073171_050--Hb_002999_130 Hb_007193_030 Hb_007193_030 Hb_073171_050--Hb_007193_030 Hb_028285_020 Hb_028285_020 Hb_073171_050--Hb_028285_020 Hb_001623_410 Hb_001623_410 Hb_073171_050--Hb_001623_410 Hb_012799_040 Hb_012799_040 Hb_073171_050--Hb_012799_040 Hb_001369_020--Hb_007193_030 Hb_001369_020--Hb_028285_020 Hb_005080_020 Hb_005080_020 Hb_001369_020--Hb_005080_020 Hb_001369_020--Hb_001623_410 Hb_003905_040 Hb_003905_040 Hb_001369_020--Hb_003905_040 Hb_000594_150 Hb_000594_150 Hb_002999_130--Hb_000594_150 Hb_000656_260 Hb_000656_260 Hb_002999_130--Hb_000656_260 Hb_010180_050 Hb_010180_050 Hb_002999_130--Hb_010180_050 Hb_004800_140 Hb_004800_140 Hb_002999_130--Hb_004800_140 Hb_002999_130--Hb_001369_020 Hb_004218_080 Hb_004218_080 Hb_007193_030--Hb_004218_080 Hb_007193_030--Hb_001623_410 Hb_005725_280 Hb_005725_280 Hb_007193_030--Hb_005725_280 Hb_007193_030--Hb_003905_040 Hb_004108_120 Hb_004108_120 Hb_028285_020--Hb_004108_120 Hb_028285_020--Hb_007193_030 Hb_028285_020--Hb_002999_130 Hb_002783_140 Hb_002783_140 Hb_028285_020--Hb_002783_140 Hb_000086_620 Hb_000086_620 Hb_001623_410--Hb_000086_620 Hb_000985_140 Hb_000985_140 Hb_001623_410--Hb_000985_140 Hb_001623_410--Hb_005080_020 Hb_003078_070 Hb_003078_070 Hb_001623_410--Hb_003078_070 Hb_012799_040--Hb_000656_260 Hb_000032_090 Hb_000032_090 Hb_012799_040--Hb_000032_090 Hb_004393_030 Hb_004393_030 Hb_012799_040--Hb_004393_030 Hb_036492_020 Hb_036492_020 Hb_012799_040--Hb_036492_020 Hb_001660_130 Hb_001660_130 Hb_012799_040--Hb_001660_130 Hb_029584_110 Hb_029584_110 Hb_012799_040--Hb_029584_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.329581 40.4814 34.8181 16.0421 0.208622 0.419752
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.99323 1.95351 0.642424 5.4287 21.3074

CAGE analysis