Hb_073171_070

Information

Type -
Description -
Location Contig73171: 70913-76962
Sequence    

Annotation

kegg
ID rcu:RCOM_1489440
description hypothetical protein
nr
ID XP_012069082.1
description PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
swissprot
ID Q4U0S5
description RNA polymerase II-associated factor 1 homolog OS=Danio rerio GN=paf1 PE=1 SV=1
trembl
ID A0A067L8N5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24859 PE=4 SV=1
Gene Ontology
ID GO:0009640
description rna polymerase ii-associated factor 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56089: 70389-70516 , PASA_asmbl_56090: 70539-71055 , PASA_asmbl_56091: 71698-73652 , PASA_asmbl_56092: 71313-76892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073171_070 0.0 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
2 Hb_003040_050 0.042135891 - - PREDICTED: uncharacterized protein LOC105638219 [Jatropha curcas]
3 Hb_000773_040 0.0468721135 - - PREDICTED: uncharacterized protein LOC105641863 isoform X2 [Jatropha curcas]
4 Hb_006663_060 0.0481691439 - - PREDICTED: calcium homeostasis endoplasmic reticulum protein [Jatropha curcas]
5 Hb_009288_020 0.0490033351 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
6 Hb_000270_190 0.0537395086 transcription factor TF Family: DDT tRNA ligase, putative [Ricinus communis]
7 Hb_007413_010 0.0583778285 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
8 Hb_005489_040 0.0599029558 - - PREDICTED: cullin-1 [Jatropha curcas]
9 Hb_002874_110 0.061014001 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
10 Hb_000317_100 0.0611792276 - - PREDICTED: uncharacterized protein LOC105646995 [Jatropha curcas]
11 Hb_005260_030 0.0649641717 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
12 Hb_000409_050 0.0651349927 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
13 Hb_000139_080 0.0653983494 - - PREDICTED: vacuole membrane protein KMS1 isoform X2 [Jatropha curcas]
14 Hb_002027_080 0.0658704552 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
15 Hb_001817_170 0.0662006688 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
16 Hb_002890_130 0.0665305732 - - tip120, putative [Ricinus communis]
17 Hb_188281_040 0.0668581958 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
18 Hb_006100_020 0.0671235478 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
19 Hb_001377_190 0.068821872 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
20 Hb_001789_110 0.0697986131 - - ubiquitin-protein ligase, putative [Ricinus communis]

Gene co-expression network

sample Hb_073171_070 Hb_073171_070 Hb_003040_050 Hb_003040_050 Hb_073171_070--Hb_003040_050 Hb_000773_040 Hb_000773_040 Hb_073171_070--Hb_000773_040 Hb_006663_060 Hb_006663_060 Hb_073171_070--Hb_006663_060 Hb_009288_020 Hb_009288_020 Hb_073171_070--Hb_009288_020 Hb_000270_190 Hb_000270_190 Hb_073171_070--Hb_000270_190 Hb_007413_010 Hb_007413_010 Hb_073171_070--Hb_007413_010 Hb_003040_050--Hb_009288_020 Hb_003040_050--Hb_006663_060 Hb_000317_100 Hb_000317_100 Hb_003040_050--Hb_000317_100 Hb_011174_020 Hb_011174_020 Hb_003040_050--Hb_011174_020 Hb_001925_060 Hb_001925_060 Hb_003040_050--Hb_001925_060 Hb_000773_040--Hb_000270_190 Hb_000773_040--Hb_000317_100 Hb_000409_050 Hb_000409_050 Hb_000773_040--Hb_000409_050 Hb_002890_130 Hb_002890_130 Hb_000773_040--Hb_002890_130 Hb_000773_040--Hb_003040_050 Hb_006663_060--Hb_009288_020 Hb_006210_010 Hb_006210_010 Hb_006663_060--Hb_006210_010 Hb_002874_110 Hb_002874_110 Hb_006663_060--Hb_002874_110 Hb_000568_050 Hb_000568_050 Hb_006663_060--Hb_000568_050 Hb_006839_010 Hb_006839_010 Hb_009288_020--Hb_006839_010 Hb_000059_230 Hb_000059_230 Hb_009288_020--Hb_000059_230 Hb_009288_020--Hb_011174_020 Hb_005214_140 Hb_005214_140 Hb_000270_190--Hb_005214_140 Hb_000270_190--Hb_003040_050 Hb_004324_360 Hb_004324_360 Hb_000270_190--Hb_004324_360 Hb_001329_250 Hb_001329_250 Hb_000270_190--Hb_001329_250 Hb_006913_020 Hb_006913_020 Hb_007413_010--Hb_006913_020 Hb_003117_030 Hb_003117_030 Hb_007413_010--Hb_003117_030 Hb_008948_020 Hb_008948_020 Hb_007413_010--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_007413_010--Hb_001377_190 Hb_007413_010--Hb_001925_060 Hb_001789_110 Hb_001789_110 Hb_007413_010--Hb_001789_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35604 7.3693 7.58017 8.09946 5.20376 4.91474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.28702 4.14525 5.17465 7.80055 11.5997

CAGE analysis