Hb_073171_080

Information

Type -
Description -
Location Contig73171: 77091-91947
Sequence    

Annotation

kegg
ID rcu:RCOM_1489430
description DNA repair/transcription protein met18/mms19, putative
nr
ID XP_012069080.1
description PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
swissprot
ID Q54J88
description MMS19 nucleotide excision repair protein homolog OS=Dictyostelium discoideum GN=mms19 PE=3 SV=2
trembl
ID B9RQE4
description DNA repair/transcription protein met18/mms19, putative OS=Ricinus communis GN=RCOM_1489430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56095: 77211-81271 , PASA_asmbl_56097: 82109-83563 , PASA_asmbl_56098: 83567-84903 , PASA_asmbl_56099: 83908-84278 , PASA_asmbl_56101: 88668-89003 , PASA_asmbl_56102: 92938-93586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073171_080 0.0 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
2 Hb_000684_420 0.0597175952 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
3 Hb_004724_360 0.0632064025 - - OTU-like cysteine protease family protein [Populus trichocarpa]
4 Hb_000327_310 0.0642361919 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Jatropha curcas]
5 Hb_000236_280 0.067521816 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
6 Hb_001396_290 0.0730729953 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
7 Hb_002400_180 0.0741948164 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000035_400 0.0762035569 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
9 Hb_005237_060 0.0766712179 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
10 Hb_000640_320 0.0770256559 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
11 Hb_000076_080 0.0772375191 - - PREDICTED: protein MOS2 [Jatropha curcas]
12 Hb_002133_030 0.0781141929 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
13 Hb_002883_010 0.0781270592 - - PREDICTED: putative methyltransferase NSUN6 isoform X1 [Jatropha curcas]
14 Hb_001437_100 0.0786596086 - - PREDICTED: DNA-binding protein REB1-like [Jatropha curcas]
15 Hb_001474_030 0.0788763583 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
16 Hb_003006_060 0.079278517 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
17 Hb_000343_210 0.0793163102 - - ran-binding protein, putative [Ricinus communis]
18 Hb_000318_140 0.0794456674 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
19 Hb_002048_090 0.0796455125 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
20 Hb_001616_090 0.0803537004 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_073171_080 Hb_073171_080 Hb_000684_420 Hb_000684_420 Hb_073171_080--Hb_000684_420 Hb_004724_360 Hb_004724_360 Hb_073171_080--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_073171_080--Hb_000327_310 Hb_000236_280 Hb_000236_280 Hb_073171_080--Hb_000236_280 Hb_001396_290 Hb_001396_290 Hb_073171_080--Hb_001396_290 Hb_002400_180 Hb_002400_180 Hb_073171_080--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_000684_420--Hb_000076_080 Hb_002097_090 Hb_002097_090 Hb_000684_420--Hb_002097_090 Hb_000186_280 Hb_000186_280 Hb_000684_420--Hb_000186_280 Hb_000684_420--Hb_002400_180 Hb_000684_420--Hb_004724_360 Hb_004724_360--Hb_000076_080 Hb_004724_360--Hb_000327_310 Hb_001504_160 Hb_001504_160 Hb_004724_360--Hb_001504_160 Hb_000001_180 Hb_000001_180 Hb_004724_360--Hb_000001_180 Hb_005295_040 Hb_005295_040 Hb_004724_360--Hb_005295_040 Hb_001975_020 Hb_001975_020 Hb_000327_310--Hb_001975_020 Hb_000230_370 Hb_000230_370 Hb_000327_310--Hb_000230_370 Hb_046615_020 Hb_046615_020 Hb_000327_310--Hb_046615_020 Hb_001366_040 Hb_001366_040 Hb_000327_310--Hb_001366_040 Hb_004241_070 Hb_004241_070 Hb_000236_280--Hb_004241_070 Hb_000104_080 Hb_000104_080 Hb_000236_280--Hb_000104_080 Hb_000088_200 Hb_000088_200 Hb_000236_280--Hb_000088_200 Hb_004044_020 Hb_004044_020 Hb_000236_280--Hb_004044_020 Hb_004525_100 Hb_004525_100 Hb_000236_280--Hb_004525_100 Hb_000120_510 Hb_000120_510 Hb_001396_290--Hb_000120_510 Hb_004225_130 Hb_004225_130 Hb_001396_290--Hb_004225_130 Hb_002048_090 Hb_002048_090 Hb_001396_290--Hb_002048_090 Hb_000504_160 Hb_000504_160 Hb_001396_290--Hb_000504_160 Hb_006829_090 Hb_006829_090 Hb_001396_290--Hb_006829_090 Hb_003581_120 Hb_003581_120 Hb_002400_180--Hb_003581_120 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_000803_300 Hb_000803_300 Hb_002400_180--Hb_000803_300 Hb_002400_180--Hb_002097_090 Hb_000034_050 Hb_000034_050 Hb_002400_180--Hb_000034_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8602 8.51566 4.84614 2.70983 19.646 20.6361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.04191 6.92641 5.24828 4.7458 4.33059

CAGE analysis