Hb_073171_090

Information

Type -
Description -
Location Contig73171: 92944-95800
Sequence    

Annotation

kegg
ID rcu:RCOM_1489420
description hypothetical protein
nr
ID XP_012069079.1
description PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0V5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24857 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56102: 92938-93586 , PASA_asmbl_56103: 93951-95771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073171_090 0.0 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
2 Hb_000059_200 0.0736540998 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
3 Hb_005322_050 0.0776746621 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
4 Hb_056987_010 0.0867833828 - - DNA-damage-repair/toleration protein DRT111, chloroplastic [Glycine soja]
5 Hb_007163_060 0.0869855095 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
6 Hb_000300_550 0.0943522122 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
7 Hb_000302_170 0.0946028716 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
8 Hb_000580_030 0.0959283719 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
9 Hb_001489_100 0.106188352 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
10 Hb_000958_150 0.1076806828 - - Actin, putative [Ricinus communis]
11 Hb_002081_120 0.107737983 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
12 Hb_000866_450 0.1093219156 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_172257_010 0.1103044098 transcription factor TF Family: HMG high mobility group family protein [Populus trichocarpa]
14 Hb_000805_210 0.1104902446 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
15 Hb_164945_010 0.1110988984 - - PREDICTED: DNA primase small subunit [Jatropha curcas]
16 Hb_152910_010 0.1111460617 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
17 Hb_027654_020 0.1115683745 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
18 Hb_156635_020 0.1119208355 - - PREDICTED: L-lactate dehydrogenase B [Jatropha curcas]
19 Hb_000890_030 0.1148150239 - - plastid CUL1 [Hevea brasiliensis]
20 Hb_002666_080 0.117098675 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_073171_090 Hb_073171_090 Hb_000059_200 Hb_000059_200 Hb_073171_090--Hb_000059_200 Hb_005322_050 Hb_005322_050 Hb_073171_090--Hb_005322_050 Hb_056987_010 Hb_056987_010 Hb_073171_090--Hb_056987_010 Hb_007163_060 Hb_007163_060 Hb_073171_090--Hb_007163_060 Hb_000300_550 Hb_000300_550 Hb_073171_090--Hb_000300_550 Hb_000302_170 Hb_000302_170 Hb_073171_090--Hb_000302_170 Hb_002081_120 Hb_002081_120 Hb_000059_200--Hb_002081_120 Hb_096819_010 Hb_096819_010 Hb_000059_200--Hb_096819_010 Hb_000958_150 Hb_000958_150 Hb_000059_200--Hb_000958_150 Hb_003470_030 Hb_003470_030 Hb_000059_200--Hb_003470_030 Hb_000205_130 Hb_000205_130 Hb_000059_200--Hb_000205_130 Hb_005322_050--Hb_000300_550 Hb_005322_050--Hb_000302_170 Hb_172257_010 Hb_172257_010 Hb_005322_050--Hb_172257_010 Hb_005322_050--Hb_007163_060 Hb_000958_080 Hb_000958_080 Hb_005322_050--Hb_000958_080 Hb_027654_020 Hb_027654_020 Hb_005322_050--Hb_027654_020 Hb_056987_010--Hb_000958_150 Hb_000264_080 Hb_000264_080 Hb_056987_010--Hb_000264_080 Hb_002284_170 Hb_002284_170 Hb_056987_010--Hb_002284_170 Hb_000139_320 Hb_000139_320 Hb_056987_010--Hb_000139_320 Hb_056987_010--Hb_000302_170 Hb_007163_060--Hb_172257_010 Hb_004223_110 Hb_004223_110 Hb_007163_060--Hb_004223_110 Hb_003746_030 Hb_003746_030 Hb_007163_060--Hb_003746_030 Hb_007163_060--Hb_000300_550 Hb_009449_060 Hb_009449_060 Hb_007163_060--Hb_009449_060 Hb_006022_010 Hb_006022_010 Hb_000300_550--Hb_006022_010 Hb_000300_550--Hb_027654_020 Hb_000300_550--Hb_172257_010 Hb_000300_550--Hb_000302_170 Hb_000640_190 Hb_000640_190 Hb_000300_550--Hb_000640_190 Hb_010287_030 Hb_010287_030 Hb_000302_170--Hb_010287_030 Hb_102438_030 Hb_102438_030 Hb_000302_170--Hb_102438_030 Hb_000102_050 Hb_000102_050 Hb_000302_170--Hb_000102_050 Hb_152910_010 Hb_152910_010 Hb_000302_170--Hb_152910_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.66616 4.5245 3.94575 4.3821 2.45172 2.2638
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07506 0.803543 0.957939 1.80329 0.933736

CAGE analysis