Hb_073171_100

Information

Type -
Description -
Location Contig73171: 96022-97417
Sequence    

Annotation

kegg
ID rcu:RCOM_1489410
description hypothetical protein
nr
ID XP_012069078.1
description PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
swissprot
ID Q9LIG0
description Clavaminate synthase-like protein At3g21360 OS=Arabidopsis thaliana GN=At3g21360 PE=1 SV=1
trembl
ID A0A067KXJ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24856 PE=4 SV=1
Gene Ontology
ID GO:0005634
description clavaminate synthase-like protein at3g21360

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56104: 96108-97444
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073171_100 0.0 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
2 Hb_006501_160 0.0835955386 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
3 Hb_000347_450 0.0918699701 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
4 Hb_011224_160 0.1002075815 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
5 Hb_001731_030 0.102680061 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
6 Hb_001019_050 0.103181975 - - PREDICTED: importin-13 [Jatropha curcas]
7 Hb_016347_010 0.1062363174 - - protein transporter, putative [Ricinus communis]
8 Hb_000035_390 0.1065573402 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
9 Hb_028960_030 0.1100787458 - - Short-chain dehydrogenase-reductase B [Theobroma cacao]
10 Hb_000159_120 0.1103545779 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
11 Hb_000535_050 0.1111487365 - - PREDICTED: cytosolic Fe-S cluster assembly factor narfl [Jatropha curcas]
12 Hb_002213_020 0.1130524588 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
13 Hb_094970_010 0.1139692167 - - PREDICTED: quinolinate synthase, chloroplastic [Jatropha curcas]
14 Hb_119530_010 0.1143008116 - - -
15 Hb_132880_040 0.1145406211 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X2 [Jatropha curcas]
16 Hb_002357_060 0.116185102 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
17 Hb_000088_270 0.1167038067 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
18 Hb_000215_360 0.118644237 - - Uncharacterized protein isoform 2 [Theobroma cacao]
19 Hb_010174_150 0.1189376473 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_010775_040 0.1208971749 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_073171_100 Hb_073171_100 Hb_006501_160 Hb_006501_160 Hb_073171_100--Hb_006501_160 Hb_000347_450 Hb_000347_450 Hb_073171_100--Hb_000347_450 Hb_011224_160 Hb_011224_160 Hb_073171_100--Hb_011224_160 Hb_001731_030 Hb_001731_030 Hb_073171_100--Hb_001731_030 Hb_001019_050 Hb_001019_050 Hb_073171_100--Hb_001019_050 Hb_016347_010 Hb_016347_010 Hb_073171_100--Hb_016347_010 Hb_006501_160--Hb_000347_450 Hb_000302_200 Hb_000302_200 Hb_006501_160--Hb_000302_200 Hb_028960_030 Hb_028960_030 Hb_006501_160--Hb_028960_030 Hb_001269_380 Hb_001269_380 Hb_006501_160--Hb_001269_380 Hb_000997_180 Hb_000997_180 Hb_006501_160--Hb_000997_180 Hb_000347_450--Hb_011224_160 Hb_000088_270 Hb_000088_270 Hb_000347_450--Hb_000088_270 Hb_000684_040 Hb_000684_040 Hb_000347_450--Hb_000684_040 Hb_050847_050 Hb_050847_050 Hb_000347_450--Hb_050847_050 Hb_010775_040 Hb_010775_040 Hb_000347_450--Hb_010775_040 Hb_000183_090 Hb_000183_090 Hb_000347_450--Hb_000183_090 Hb_000510_340 Hb_000510_340 Hb_011224_160--Hb_000510_340 Hb_011224_160--Hb_000088_270 Hb_003777_290 Hb_003777_290 Hb_011224_160--Hb_003777_290 Hb_000363_190 Hb_000363_190 Hb_011224_160--Hb_000363_190 Hb_021576_010 Hb_021576_010 Hb_011224_160--Hb_021576_010 Hb_001493_150 Hb_001493_150 Hb_001731_030--Hb_001493_150 Hb_000808_170 Hb_000808_170 Hb_001731_030--Hb_000808_170 Hb_001731_030--Hb_028960_030 Hb_000159_120 Hb_000159_120 Hb_001731_030--Hb_000159_120 Hb_001731_030--Hb_011224_160 Hb_001019_050--Hb_000088_270 Hb_025336_020 Hb_025336_020 Hb_001019_050--Hb_025336_020 Hb_001019_050--Hb_000347_450 Hb_001019_050--Hb_000159_120 Hb_107298_010 Hb_107298_010 Hb_001019_050--Hb_107298_010 Hb_005489_140 Hb_005489_140 Hb_001019_050--Hb_005489_140 Hb_000363_040 Hb_000363_040 Hb_016347_010--Hb_000363_040 Hb_000327_250 Hb_000327_250 Hb_016347_010--Hb_000327_250 Hb_004677_050 Hb_004677_050 Hb_016347_010--Hb_004677_050 Hb_002908_050 Hb_002908_050 Hb_016347_010--Hb_002908_050 Hb_003544_030 Hb_003544_030 Hb_016347_010--Hb_003544_030 Hb_016347_010--Hb_021576_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.84152 28.4675 16.0344 25.8252 8.37793 12.7293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.9882 20.7047 16.8627 52.3865 33.1882

CAGE analysis